fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G24500 MBF1C, ATMBF1C multiprotein bridging factor 1C (.1.2)

>AT3G24500.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstEII, BstF5I, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HindIII, HphI, Hpy99I, HpyCH4IV, HpyCH4V, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIII, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TfiI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 83, 124
AluI AG|CT 106, 207, 367
AlwNI CAGNNN|CTG 227
ApoI Pu|AATTPy 145
BfaI C|TAG 410
BsaJI C|CNNGG 15
BsaWI [AT]|CCGG[AT] 189
BsrFI Pu|CCGGPy 154
BsrI ACTGGN| 35
BssKI |CCNGG 15
BstBI TT|CGAA 159
BstNI CC|[AT]GG 15
BstUI CG|CG 83, 124
Cac8I GCN|NGC 228, 390
Cfr10I [AG]|CCGG[TC] 154
DdeI C|TNAG 111, 337, 423
DpnI GA-CH3|TC 86, 239, 322
DpnII |GATC 86, 239, 322
Fnu4HI GC|NGC 105, 231
HincII GTPy|PuAC 100
HinfI G|ANTC 335
HpaI GTT|AAC 100
HpaII C|CGG 153, 188
Hpy188I TCN|GA 89, 110
HpyCH4III ACN|GT 118, 135
MboI |GATC 86, 239, 322
MseI T|TAA 99, 138, 195, 417
MspI C|CGG 153, 188
MwoI GCNNNNN|NNGC 102, 312, 390
NlaIV GGN|NCC 39, 186
PspGI |CC[AT]GG 15
Sau3AI |GATC 86, 239, 322
ScrFI CC|NGG 15
Taqƒ¿I T|CGA 147, 158
TseI G|C[AT]GC 105
Tsp45I |GT[CG]AC 299
Tsp509I |AATT 144, 433


Click here to view TAIR data

>AT3G24500.1 length:447
ATGCCGAGCA GATACCCAGG AGCAGTAACA CAAGACTGGG AACCAGTAGT 
50
TCTCCACAAA TCAAAACAAA AGAGCCAAGA CCTACGCGAT CCGAAAGCGG 
100
TTAACGCAGC TCTGAGAAAC GGTGTCGCGG TTCAAACGGT TAAGAAATTC 
150
GATGCCGGTT CGAACAAAAA GGGGAAATCT ACGGCGGTTC CGGTGATTAA 
200
CACGAAGAAG CTGGAAGAAG AAACAGAGCC TGCGGCGATG GATCGTGTGA 
250
AAGCAGAGGT GAGGTTGATG ATACAGAAAG CGAGATTGGA GAAGAAGATG 
300
TCACAAGCGG ATTTGGCGAA ACAGATCAAT GAGAGGACTC AGGTAGTTCA 
350
GGAATATGAG AATGGTAAAG CTGTTCCTAA TCAGGCTGTG CTTGCGAAGA 
400
TGGAGAAGGT TCTAGGTGTT AAACTTAGGG GTAAAATTGG GAAATGA
450

>AT3G24500.1 longest ORF length:148
MPSRYPGAVT QDWEPVVLHK SKQKSQDLRD PKAVNAALRN GVAVQTVKKF 
50
DAGSNKKGKS TAVPVINTKK LEEETEPAAM DRVKAEVRLM IQKARLEKKM 
100
SQADLAKQIN ERTQVVQEYE NGKAVPNQAV LAKMEKVLGV KLRGKIGK
150