| Locus |
Common name |
Short description |
| AT3G25730 |
EDF3 |
ethylene response DNA binding factor 3 (.1) |
>AT3G25730.1 CDS map
>>Show genomic map

Uncut enzymes: Acc65I, AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HphI, HpyCH4V, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, TspRI, Tth111I, XhoI, XmaI, XmnI
| Name |
Recognition sequence |
Cut positions |
| AatII
| GACGT|C |
298, 571 |
| AccI
| GT|[AC][TG]AC |
19 |
| AccII(FnuDII)
| CG|CG |
245, 301, 323, 382 |
| AciI
| C|CGC |
322 |
| AflIII
| A|CPuPyGT |
246 |
| AluI
| AG|CT |
26, 165, 220, 283 |
| ApoI
| Pu|AATTPy |
675, 838 |
| BanII
| GPuGCPy|C |
27, 221 |
| BclI
| T|GATCA |
803 |
| BfaI
| C|TAG |
875 |
| BsaBI
| GATNN|NNATC |
830 |
| BsaHI
| GPu|CGPyC |
298, 571 |
| BsaJI
| C|CNNGG |
318 |
| BsiHKAI
| G[AT]GC[AT]|C |
27, 221 |
| BslI
| CCNNNNN|NNGG |
757 |
| Bsp1286I
| G[GAT]GC[CAT]|C |
27, 221 |
| BssKI
| |CCNGG |
865 |
| BssSI
| C|TCGTG |
287 |
| BstAPI
| GCANNNN|NTGC |
288 |
| BstBI
| TT|CGAA |
358, 390, 679 |
| BstF5I
| GGATGNN| |
4 |
| BstUI
| CG|CG |
245, 301, 323, 382 |
| BstYI
| Pu|GATCPy |
817, 873 |
| BtgI
| C|CPuPyGG |
318 |
| DdeI
| C|TNAG |
223 |
| DpnI
| GA-CH3|TC |
400, 802, 816, 824, 830, 872 |
| DpnII
| |GATC |
400, 802, 816, 824, 830, 872 |
| DraI
| TTT|AAA |
526, 811, 921 |
| EaeI
| Py|GGCCPu |
321 |
| Fnu4HI
| GC|NGC |
282, 303, 322 |
| HaeIII
| GG|CC |
320 |
| HhaI
| GCG|C |
383 |
| HinP1I
| G|CGC |
383 |
| HincII
| GTPy|PuAC |
688, 747 |
| HindIII
| A|AGCTT |
166 |
| HinfI
| G|ANTC |
42, 120, 156, 181, 766 |
| HpaI
| GTT|AAC |
688 |
| HpaII
| C|CGG |
50, 71, 864 |
| Hpy188I
| TCN|GA |
123, 224, 396 |
| Hpy99I
| CG[AT]CG| |
296, 352, 484, 572, 929, 967 |
| HpyCH4III
| ACN|GT |
130, 310, 460, 466, 542, 555, 586, 632 |
| HpyCH4IV
| A|CGT |
297, 353, 454, 570, 648, 684 |
| MboI
| |GATC |
400, 802, 816, 824, 830, 872 |
| MluI
| A|CGCGT |
246 |
| MseI
| T|TAA |
377, 525, 657, 687, 771, 810, 920, 959, 971 |
| MspI
| C|CGG |
50, 71, 864 |
| MwoI
| GCNNNNN|NNGC |
106, 288 |
| NciI
| CC|[CG]GG |
865 |
| NlaIII
| CATG| |
7 |
| NlaIV
| GGN|NCC |
707 |
| PflMI
| CCANNNN|NTGG |
757 |
| RsaI
| GT|AC |
113, 258 |
| SacI
| GAGCT|C |
27, 221 |
| Sau3AI
| |GATC |
400, 802, 816, 824, 830, 872 |
| ScrFI
| CC|NGG |
865 |
| SfcI
| C|TPuPyAG |
38 |
| Taqƒ¿I
| T|CGA |
135, 141, 147, 357, 389, 503, 678, 857 |
| TfiI
| G|A[AT]TC |
42, 120, 156, 181, 766 |
| TseI
| G|C[AT]GC |
282 |
| Tsp45I
| |GT[CG]AC |
463, 568 |
| Tsp509I
| |AATT |
338, 674, 837 |
| XbaI
| T|CTAGA |
876 |
| XcmI
| CCANNNNN|NNNNTGG |
214 |
Click here to view TAIR data
>AT3G25730.1 length:1002
ATGGATGCCA TGAGTAGCGT AGACGAGAGC TCTACAACTA CAGATTCCAT | 50 |
TCCGGCGAGA AAGTCATCGT CTCCGGCGAG TTTACTATAT AGAATGGGAA | 100 |
GCGGAACAAG CGTGGTACTT GATTCAGAGA ACGGTGTCGA AGTCGAAGTC | 150 |
GAAGCCGAAT CAAGAAAGCT TCCTTCTTCA AGATTCAAAG GTGTTGTTCC | 200 |
TCAACCAAAT GGAAGATGGG GAGCTCAGAT TTACGAGAAA CATCAACGCG | 250 |
TGTGGCTTGG TACTTTCAAC GAGGAAGACG AAGCAGCTCG TGCTTACGAC | 300 |
GTCGCGGCTC ACCGTTTCCG TGGCCGCGAT GCCGTTACTA ATTTCAAAGA | 350 |
CACGACGTTC GAAGAAGAGG TTGAGTTCTT AAACGCGCAT TCGAAATCAG | 400 |
AGATCGTAGA TATGTTGAGA AAACACACTT ACAAAGAAGA GTTAGACCAA | 450 |
AGGAAACGTA ACCGTGACGG TAACGGAAAA GAGACGACGG CGTTTGCTTT | 500 |
GGCTTCGATG GTGGTTATGA CGGGGTTTAA AACGGCGGAG TTACTGTTTG | 550 |
AGAAAACGGT AACGCCAAGT GACGTCGGGA AACTAAACCG TTTAGTTATA | 600 |
CCAAAACACC AAGCGGAGAA ACATTTTCCG TTACCGTTAG GTAATAATAA | 650 |
CGTCTCCGTT AAAGGTATGC TGTTGAATTT CGAAGACGTT AACGGGAAAG | 700 |
TGTGGAGGTT CCGTTACTCT TATTGGAATA GTAGTCAAAG TTATGTGTTG | 750 |
ACCAAAGGTT GGAGTAGATT CGTTAAAGAG AAGAGACTTT GTGCTGGTGA | 800 |
TTTGATCAGT TTTAAAAGAT CCAACGATCA AGATCAAAAA TTCTTTATCG | 850 |
GGTGGAAATC GAAATCCGGG TTGGATCTAG AGACGGGTCG GGTTATGAGA | 900 |
TTGTTTGGGG TTGATATTTC TTTAAACGCC GTCGTTGTAG TGAAGGAAAC | 950 |
AACGGAGGTG TTAATGTCGT CGTTAAGGTG TAAGAAGCAA CGAGTTTTGT | 1000 |
AA | 1050 |
>AT3G25730.1 longest ORF length:333
MDAMSSVDES STTTDSIPAR KSSSPASLLY RMGSGTSVVL DSENGVEVEV | 50 |
EAESRKLPSS RFKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD | 100 |
VAAHRFRGRD AVTNFKDTTF EEEVEFLNAH SKSEIVDMLR KHTYKEELDQ | 150 |
RKRNRDGNGK ETTAFALASM VVMTGFKTAE LLFEKTVTPS DVGKLNRLVI | 200 |
PKHQAEKHFP LPLGNNNVSV KGMLLNFEDV NGKVWRFRYS YWNSSQSYVL | 250 |
TKGWSRFVKE KRLCAGDLIS FKRSNDQDQK FFIGWKSKSG LDLETGRVMR | 300 |
LFGVDISLNA VVVVKETTEV LMSSLRCKKQ RVL | 350 |
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