|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT3G27700 | zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) |
>AT3G27700.2 CDS map
>>Show genomic map
Uncut enzymes: AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, SalI, SmaI, SpeI, XhoI
| Name | Recognition sequence | Cut positions |
| ApaI | GGGCC|C | 365 |
| NcoI | C|CATGG | 490 |
| NdeI | CA|TATG | 409 |
| PstI | CTGCA|G | 2684 |
| PvuII | CAG|CTG | 473, 1154 |
| SacI | GAGCT|C | 821, 1691 |
| StyI | C|C[AT][AT]GG | 490, 1745 |
| XbaI | T|CTAGA | 1060 |
Click here to view TAIR data
>AT3G27700.2 length:2727
ATGGAACTTT CTGTTTCCTC TCCAAAGCAA AGTGTGTTAT CTCCACCTGA | 50 |
TTGTATGAGT GACCCTGAGG AGGAGCATGA GATCAGTGAG GAGGAGGATG | 100 |
ATGATCGCAA CCATAAGCAC CGTAGGAAAG AAGAGACCAG GTCTCAGTCT | 150 |
TTGGAACAAG ATTCTTCAGA TCAGGCTTTC TCACGGCCGT ACAGGAAAAA | 200 |
CTATAGACAT TATGAAAATG GCAATTCGTT TAGTGAACAT GAAAAGCGGT | 250 |
CTTTTGGGAC TGGATCAGGG CAACGTGTAC AGTTTGATAA CCAAAGAATG | 300 |
AGGTCAAACC CAATGTTTTC AAGGGACTCT GGTCCTGGTA GAGGTAGAGG | 350 |
AAACTATGGT TCTTGGGCCC AGCGTGATTC CAGGTTTAAT CCTGTTGATC | 400 |
TCTCATCTCA TATGGTTCAA GTCGGGTCTA TGGGCCAGGG TATGTTTGGA | 450 |
GGAAGGGGAC TAGCTGGTGT TTCAGCTGCT CAAAGTGCAC CATGGCCTCC | 500 |
TTTTGGAATG ATTCCTGGAG TTCCTAATGG TGGCTTGGAT GGTTTCCATC | 550 |
ACTTACAAGG GTCCCTTAGA CCGCCCTTAA ATGCGCCACT TAACATGGGT | 600 |
ATTCCTCGGC AACGATGCAG AGACTTTGAG GAACGTGGTT TCTGCCTCAG | 650 |
AGGGGACATG TGTCCAATGG AGCATGGAAT GAATCGTATT GTTGTTGACG | 700 |
ATGTTCAGAG TCTATCACAG TTTAACCTTC CCGTTTCAGT CCCTGGTGCA | 750 |
CCTCATCTGG CAGCTTCTTC TAAACAAGTG CCCGCTCAGT TTGGGGGTGC | 800 |
CAGTTTCATG AATCCTAAAG GAGCTCATGG GAGGACTAAC GAGGGGGGAA | 850 |
TGGCTGTTGA TGGTTTGGGT TATGGGGATG CATATCCTAG TGCTGGTGGA | 900 |
ACTGACTTTT ACGATCCTGA TCAACCTTTG TGGAATAATA GTACTGGTGA | 950 |
AACTTCAGGT GCAATATCTA CACTCAATTC TCATGGGGTT GATGAGAATG | 1000 |
TGGCTCCACT GGATGACAGT AACCAAGACG CCGCTGAAAA TGGGTGTGGT | 1050 |
ATTAGAGACT CTAGAAGCAC AAGTCAATCA GTTTGGGGAA GAATGAAAGG | 1100 |
TTCTAATAGT CAAGCAAATT CCAAAGAGAA AGCTGATGCA GTATTAAATT | 1150 |
CATCAGCTGT TCCTGAAGAT CAATTGAAGG AGGTCTCAGT TAATTCATCT | 1200 |
CGACACGGTA AACAAAACCA TGTTGGTGAA AGTGTCGCAA AAGTTGTTGA | 1250 |
TTCATCGAAT ATTTCAAATG ATATGATGAA CAATACAAGG AAACCAACTC | 1300 |
AAAAGGCAAT GCGGACTCTA TTTGTGAATT ATGTTCCACA CGAGAGCAAC | 1350 |
AGAAGGGACC TCATTCTTGC CCATTTTCAG AAATTTGGGA AAGTTATTGA | 1400 |
CATTCACATC CCAGTAAATA GTGAGAGAGC ATTTGTGCAG TTCTCAAAAC | 1450 |
GTGAAGAGGC TGAATCTGCC CTCAGGGCAC CTGATGCTGT GATGGGTAAC | 1500 |
CGCTTCATCA AACTTTGGTG GGCAAATAGA GATAGTATAC CTGATAATGG | 1550 |
CCTGTCCACT GGCAGTGGTG CTTCTATGAA GGGTCGTAGT ATGACTGCTT | 1600 |
CTGGAGCACA GAACCAATTT CCTATTGCTG CTGCATCGAA AAGCAACCAT | 1650 |
GTATCTTCAA TTGCTAAGGT CCCTACCTTC CAAACTGGTG GAGCTCCATC | 1700 |
CTCCTCTGAA CAGCCTAAGC CTGTGGTGGT GACCACCAGT GGTCCCAAGG | 1750 |
TTACGCCGCT TCAGCAGAAA AAAGCAGACA CTCTTGAGCG GTTGAAGGAG | 1800 |
ACTCTTCGTA AAAAACAGGA AATGCTGGAG CAGAAGCGTA ACGAGTACCG | 1850 |
CAAAAAATTG GCTACACTTG AAAAACAAGG TACTGTTGTC AAGAGGGAGG | 1900 |
AAGCAGATGA GCCAGATGCT AAGCGTGTTA AACTAGACAC AGCCTCTGAT | 1950 |
TCGGGAGCTG CAATTGCATC ACCAAAAACA GAGTCATCGA CAGATAAGAA | 2000 |
AGTGCCTATC CTGAAACCAC TTTCCACCGC CAAACTAAGC ACAGAAACGC | 2050 |
CATCACCCGA TTCAAAAAAC TTTAAGCAAA GACCATATTC GTTTACCACA | 2100 |
AGTTTGAACG CTCCTATGGT AAATAGGTAT AAGTTGGATA ACCGCACCAC | 2150 |
GACCATCAAA GTGGTTCCTC CTTTGCCAAC TGGGTTAGCT GATGTTGCTG | 2200 |
TCGTAAAGGA ACATTTTTCA TCTTACGGCG AAGTCTCAAA AGTGGAACTG | 2250 |
GAAGACAATG CATCGATTGA TAGTGGCAAG GATCATGAAA CACAGAACGA | 2300 |
AAGCCGTGCA GCTTGTGTCA CATTTGTGAA ACGCAGCGCA GCAGAGAAAG | 2350 |
CGTTTGCTAA TGCAAAGTGT TGGCAAGAAC ACACGTTGCA GCTCGTGTGG | 2400 |
GTAACACGTC AAAGCAACAG AGAGAGCAAC AATAACAATA ACAATAGTAA | 2450 |
TAGTCTCTCT GTTTCTCGTG ACAACCTTAG CAGCAAAAAC AAGTGCGCTT | 2500 |
CTGTCTCTAA TGACCCAAAA CCAGCAGTTG AAGTCAAGAC CTCCTCTACG | 2550 |
GAAGAACCAG AGAATACAAA TGTTTCTGGA GACAACGACA GTACTTTGGA | 2600 |
TAAACAAGAG ACCAAAGAAA GCGACAATGA TAACAATAAA AGTAACCACG | 2650 |
AGTCCATCGA AGGAGCTTCT GAGGTGATTG CAACTGCAGG AACTGATGAA | 2700 |
GAACAATCTG AACAAATTCA TCAGTGA | 2750 |
>AT3G27700.2 longest ORF length:908
MELSVSSPKQ SVLSPPDCMS DPEEEHEISE EEDDDRNHKH RRKEETRSQS | 50 |
LEQDSSDQAF SRPYRKNYRH YENGNSFSEH EKRSFGTGSG QRVQFDNQRM | 100 |
RSNPMFSRDS GPGRGRGNYG SWAQRDSRFN PVDLSSHMVQ VGSMGQGMFG | 150 |
GRGLAGVSAA QSAPWPPFGM IPGVPNGGLD GFHHLQGSLR PPLNAPLNMG | 200 |
IPRQRCRDFE ERGFCLRGDM CPMEHGMNRI VVDDVQSLSQ FNLPVSVPGA | 250 |
PHLAASSKQV PAQFGGASFM NPKGAHGRTN EGGMAVDGLG YGDAYPSAGG | 300 |
TDFYDPDQPL WNNSTGETSG AISTLNSHGV DENVAPLDDS NQDAAENGCG | 350 |
IRDSRSTSQS VWGRMKGSNS QANSKEKADA VLNSSAVPED QLKEVSVNSS | 400 |
RHGKQNHVGE SVAKVVDSSN ISNDMMNNTR KPTQKAMRTL FVNYVPHESN | 450 |
RRDLILAHFQ KFGKVIDIHI PVNSERAFVQ FSKREEAESA LRAPDAVMGN | 500 |
RFIKLWWANR DSIPDNGLST GSGASMKGRS MTASGAQNQF PIAAASKSNH | 550 |
VSSIAKVPTF QTGGAPSSSE QPKPVVVTTS GPKVTPLQQK KADTLERLKE | 600 |
TLRKKQEMLE QKRNEYRKKL ATLEKQGTVV KREEADEPDA KRVKLDTASD | 650 |
SGAAIASPKT ESSTDKKVPI LKPLSTAKLS TETPSPDSKN FKQRPYSFTT | 700 |
SLNAPMVNRY KLDNRTTTIK VVPPLPTGLA DVAVVKEHFS SYGEVSKVEL | 750 |
EDNASIDSGK DHETQNESRA ACVTFVKRSA AEKAFANAKC WQEHTLQLVW | 800 |
VTRQSNRESN NNNNNSNSLS VSRDNLSSKN KCASVSNDPK PAVEVKTSST | 850 |
EEPENTNVSG DNDSTLDKQE TKESDNDNNK SNHESIEGAS EVIATAGTDE | 900 |
EQSEQIHQ | 950 |