fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G28470 TDF1, ATMYB35 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1)

>AT3G28470.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 754
EcoRI G|AATTC 403
HindIII A|AGCTT 283
NcoI C|CATGG 93, 423
SpeI A|CTAGT 658
StyI C|C[AT][AT]GG 93, 423


Click here to view TAIR data

>AT3G28470.1 length:954
ATGGGAAGAC CTCCTTGTTG TGACAAGTCC AATGTCAAGA AAGGTCTCTG 
50
GACCGAGGAA GAAGACGCTA AGATCCTTGC TTATGTTGCT ATCCATGGTG 
100
TAGGAAACTG GAGCTTGATC CCCAAAAAAG CAGGTCTGAA TCGATGTGGA 
150
AAGAGCTGTA GACTAAGATG GACTAATTAC TTAAGACCTG ACCTTAAACA 
200
TGACAGCTTC TCTACCCAAG AAGAAGAGCT TATCATTGAG TGTCATAGAG 
250
CCATTGGCAG CAGGTGGTCT TCCATTGCAC GAAAGCTTCC AGGAAGAACG 
300
GATAATGATG TGAAGAATCA CTGGAACACA AAGCTGAAGA AGAAGCTGAT 
350
GAAAATGGGG ATAGACCCGG TGACTCATAA ACCGGTTTCT CAACTCCTTG 
400
CAGAATTCAG AAACATTAGC GGCCATGGAA ATGCATCCTT CAAAACAGAA 
450
CCATCTAACA ACTCTATACT CACACAATCC AACTCAGCTT GGGAAATGAT 
500
GAGAAACACA ACAACAAACC ATGAGAGTTA TTACACCAAC TCTCCAATGA 
550
TGTTTACAAA TTCCTCTGAG TACCAAACTA CTCCATTTCA TTTCTATAGC 
600
CATCCAAATC ATCTGCTCAA TGGAACCACA TCTTCATGCT CTTCCTCATC 
650
ATCTTCTACT AGTATCACTC AGCCAAACCA AGTACCTCAA ACACCGGTTA 
700
CTAACTTCTA CTGGAGCGAT TTCCTTCTCT CGGACCCGGT TCCTCAAGTA 
750
GTGGGATCCT CAGCTACTAG CGACCTCACT TTTACGCAGA ACGAACATCA 
800
TTTCAACATC GAAGCCGAAT ACATCTCTCA AAACATCGAT TCAAAGGCCT 
850
CGGGAACATG TCATTCCGCG AGTTCCTTCG TTGACGAAAT ACTAGATAAA 
900
GACCAAGAGA TGTTGTCACA GTTTCCTCAA CTCTTGAATG ATTTCGATTA 
950
TTAG
1000

>AT3G28470.1 longest ORF length:317
MGRPPCCDKS NVKKGLWTEE EDAKILAYVA IHGVGNWSLI PKKAGLNRCG 
50
KSCRLRWTNY LRPDLKHDSF STQEEELIIE CHRAIGSRWS SIARKLPGRT 
100
DNDVKNHWNT KLKKKLMKMG IDPVTHKPVS QLLAEFRNIS GHGNASFKTE 
150
PSNNSILTQS NSAWEMMRNT TTNHESYYTN SPMMFTNSSE YQTTPFHFYS 
200
HPNHLLNGTT SSCSSSSSST SITQPNQVPQ TPVTNFYWSD FLLSDPVPQV 
250
VGSSATSDLT FTQNEHHFNI EAEYISQNID SKASGTCHSA SSFVDEILDK 
300
DQEMLSQFPQ LLNDFDY
350