fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G29340 zinc finger (C2H2 type) family protein (.1)

>AT3G29340.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PvuII, SacI, SalI, SmaI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 788, 1520, 1691
EcoRI G|AATTC 188, 399
HindIII A|AGCTT 450, 762, 1494, 1665
NheI G|CTAGC 1903
PstI CTGCA|G 109
SpeI A|CTAGT 1410


Click here to view TAIR data

>AT3G29340.1 length:1953
ATGGATTTAG ATGGTGTTGA GTTGTTACTA GACTTGAGGG AAATGGTTTC 
50
TCAATCGGGT TTCGAAAAGT CTACTACTTG CAGTGGTGTT ATTGCTCTGA 
100
GAAGTAATCT GCAGAGTAAA TCAAGTCACA AATGCAAAAT ATGTGGCAAG 
150
AGTTTTGAGT GTTATCAAGC TCTAGGTGGT CACCAAAGAA TTCACAGACC 
200
GATTAAAGAG AAACTATCGA AACAAGAGTT CAGTGAAGTA TATCCTCGGA 
250
AGAGTAAGTT GCAGAAAAGA CCTGAGAGTA GTAGCTCCTG CTATGAATGC 
300
AAAGTATGTG GCAAGATTTT TGGGTGTTAT CGAGGTCTAG GTGGCCACAC 
350
GAAACTTCAC AGATCGACTA AGAGGGAATT AGCGAGTACT CAAGATGAGA 
400
ATTCACTGTT AGACTCATCA GAAGCTAAGA AGATTGTTTC ACAACCATCA 
450
AGCTTTAAAG TCTCTCAGGA GGAGAAGTTC TTACATTGTG TGGAGTTAAA 
500
ACAAGACTTC AGTGAACCGC TTTCTCATTC GGGTGCATTA CCATCTACTC 
550
TGAGAAGTAA ATTGCAGACA AAAACTCAGT GGAAATCAAG CTGTCATTGC 
600
AAAATATGTG GCAAGAGTTT TGTGTGTTCT CAAGGTTTAG GTAATCACAA 
650
AAGAGTTCAC AGAGAGATTA GCGGGAAATT AGCGTGTAAA AGGAAGTACA 
700
CTGAAGACTA TAATCCATTC TCTGACTCAT TAAAAGCTAA GAAGATTGTT 
750
AAAAAACCAT CAAGCTTTGA AGTCTCTCAG GAGGAGAAGA TCTTACATTG 
800
TGTTGAGTTA AAACAAGACT TCGGTGAACT GCTTGCTCAC TCGGGTTTCG 
850
ACAAGTCTAT TAGTTGCAGC AAATCGATCA AAGTGAAAAA AGTAGCGCGT 
900
AAAAATGAGA AAACTGAAGA TAGTACTTCA CTGTTTGGCG TTTTTGTCGG 
950
CGAAATGTCT CAGAGACTTC ATGGTTGCAA AACATGCGGG AGAAAGTTTG 
1000
GAACTTTAAA AGGTGTGTAT GGTCACCAGA GGATGCATTC TGGTAATCAC 
1050
AATAGAATCG AAGATGAGAA TGGTTTGGAA AGGATTTGGG GTCTTAAGAA 
1100
GAAGTCTAGG GTTTGCTCTG TTTCAGCTTT TGATCGATTC AAAGGATCTT 
1150
CTTTTATGGC TGAGATTGAG AAACATGAGG TGATTGAAGC TGCATTGAAC 
1200
TTGGTTATGT TGTGTCAAGG AGTTTATGAC TTTGCTTCTA TCAGTAATTT 
1250
GCCTCTAGGT GATGGTTTCA TGGATTTAGA GCTTAAACCT TGTCCTTTGA 
1300
GAAGGAAACT ACAGAAAAAA TCTCGCTCCA GTTATAAATG CAGTATATGT 
1350
GAGAAGAGTT TTGTGTGTTC TCAAGCTCTT GGTAGTCACC AGAGACTTCA 
1400
CAGATGGAAA CTAGTGCCTA AACCTGAGTA CATTGAAGAT GATAGTTCAC 
1450
TGTTAGACTC ATCAGAAGCT AAGAAGATTG TTTCAAAACC ATCAAGCTTT 
1500
GAACATGCTC AGGAGGAGAA GATCTTACAA TGTGTTGAGC CGAAACTAGA 
1550
GTTCCACGAA CAGCTTGCTC ACTCGGGTTT CGACAAGTTT GATACTTGCA 
1600
GTAAAATCAG GTTCAGTGCA TTACCTTCTC CTCCAGAAGC TAAGAAGATT 
1650
GTTTCACAAC CACCAAGCTT TGAAGTCTCT GTGGATGAAA AGATCTTATA 
1700
TCGTGCTGAG CCAAAACTAA ACTTCAGCGA ACCGCTTGCT CACTCGTGTT 
1750
TCGACAATTC TAGTAGCTAT AGAAGCATAA TATGTGGCAA GAGTTTTGTG 
1800
TGTTCACAAG CATTAGGTGG TCACCAAACA CTTCACAGAT CGATTAAAGG 
1850
CCAATTAGCG GGTACTGAAG ATGGTAATTC ACTCTCTGTG ACTGACTCAG 
1900
AAGCTAGCAA GATTGTTGCA CAACCATCAA GCTACAAGTC TCAGGGGATA 
1950
TAA
2000

>AT3G29340.1 longest ORF length:650
MDLDGVELLL DLREMVSQSG FEKSTTCSGV IALRSNLQSK SSHKCKICGK 
50
SFECYQALGG HQRIHRPIKE KLSKQEFSEV YPRKSKLQKR PESSSSCYEC 
100
KVCGKIFGCY RGLGGHTKLH RSTKRELAST QDENSLLDSS EAKKIVSQPS 
150
SFKVSQEEKF LHCVELKQDF SEPLSHSGAL PSTLRSKLQT KTQWKSSCHC 
200
KICGKSFVCS QGLGNHKRVH REISGKLACK RKYTEDYNPF SDSLKAKKIV 
250
KKPSSFEVSQ EEKILHCVEL KQDFGELLAH SGFDKSISCS KSIKVKKVAR 
300
KNEKTEDSTS LFGVFVGEMS QRLHGCKTCG RKFGTLKGVY GHQRMHSGNH 
350
NRIEDENGLE RIWGLKKKSR VCSVSAFDRF KGSSFMAEIE KHEVIEAALN 
400
LVMLCQGVYD FASISNLPLG DGFMDLELKP CPLRRKLQKK SRSSYKCSIC 
450
EKSFVCSQAL GSHQRLHRWK LVPKPEYIED DSSLLDSSEA KKIVSKPSSF 
500
EHAQEEKILQ CVEPKLEFHE QLAHSGFDKF DTCSKIRFSA LPSPPEAKKI 
550
VSQPPSFEVS VDEKILYRAE PKLNFSEPLA HSCFDNSSSY RSIICGKSFV 
600
CSQALGGHQT LHRSIKGQLA GTEDGNSLSV TDSEASKIVA QPSSYKSQGI 
650