fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G46080 C2H2-type zinc finger family protein (.1)

>AT3G46080.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 214
HindIII A|AGCTT 149


Click here to view TAIR data

>AT3G46080.1 length:495
ATGGTTGCGA GAAGTGAGGA AGTTGAGATA GTGGAAGATA CGGCGGCGAA 
50
ATGTTTGATG TTGTTATCAA GAGTTGGAGA ATGCGGCGGA GGAGGAGAGA 
100
AACGAGTTTT CCGATGCAAG ACTTGTCTTA AAGAGTTTTC GTCGTTTCAA 
150
GCTTTGGGAG GTCATCGTGC AAGCCACAAG AAACTCATTA ACAGTAGCGA 
200
TCCATCACTT CTTGGATCCT TGTCTAACAA GAAAACTAAA ACGGCGACGT 
250
CTCATCCTTG TCCGATATGT GGCGTGGAGT TTCCGATGGG GCAAGCTCTT 
300
GGTGGTCACA TGAGGAGACA TAGGAGTGAG AAAGCCTCAC CAGGCACGTT 
350
GGTTACACGT TCTTTTTTAC CGGAGACGAC GACGGTGACG ACTTTGAAAA 
400
AATCGAGTAG TGGGAAGAGA GTGGCTTGTT TGGACTTAGA TTCGATGGAG 
450
AGTTTAGTCA ATTGGAAGTT GGAGTTGGGA AGAACGATTT CTTGA
500

>AT3G46080.1 longest ORF length:164
MVARSEEVEI VEDTAAKCLM LLSRVGECGG GGEKRVFRCK TCLKEFSSFQ 
50
ALGGHRASHK KLINSSDPSL LGSLSNKKTK TATSHPCPIC GVEFPMGQAL 
100
GGHMRRHRSE KASPGTLVTR SFLPETTTVT TLKKSSSGKR VACLDLDSME 
150
SLVNWKLELG RTIS
200