fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G46130 PFG3, ATMYB111 ATMYB48, ATMYB48-3, ATMYB48-1, ATMYB48-2 myb domain protein 48 (.1.2.3.4)

>AT3G46130.3 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 606
NcoI C|CATGG 664
NdeI CA|TATG 226
PstI CTGCA|G 288
StyI C|C[AT][AT]GG 664


Click here to view TAIR data

>AT3G46130.3 length:681
ATGGACAGAA CAGGAAGACA TACTTCTGGT TTGAACAGAA CAGGAAAGAG 
50
TTGCAGGCTA AGATGGGTTA ATTACCTACA TCCTGGTCTC AAACGTGGCA 
100
AGATGACGCC TCAAGAAGAG CGCCTCGTCC TTGAGCTTCA CGCTAAGTGG 
150
GGAAACAGGT GGTCGAAAAT AGCCCGAAAA TTGCCGGGAC GAACGGATAA 
200
CGAGATAAAG AACTACTGGA GGACTCATAT GAGGAAGAAA GCTCAAGAAA 
250
AGAAGCGTCC TGTTTCCCCA ACTTCCTCAT TTTCCAACTG CAGCTCGTCA 
300
TCTGTGACCA CTACCACCAC CAATACTCAA GATACATCGT GCCACTCGCG 
350
TAAATCTTCA GGGGAAGTGA GCTTTTACGA CACTGGAGGT TCCCGATCCA 
400
CTAGAGAGAT GAATCAAGAA AACGAAGACG TGTACTCGTT GGATGATATA 
450
TGGAGAGAGA TTGATCACTC AGCAGTAAAC ATAATAAAAC CGGTTAAAGA 
500
CATCTACTCA GAACAAAGCC ATTGCTTAAG TTACCCAAAT CTAGCTTCAC 
550
CATCATGGGA AAGCTCATTG GATTCTATAT GGAACATGGA TGCAGATAAA 
600
AGTAAGATAT CGTCTTACTT TGCAAATGAT CAGTTTCCTT TCTGTTTCCA 
650
ACACAGTAGA TCACCATGGT CGTCAGGTTA A
700

>AT3G46130.3 longest ORF length:226
MDRTGRHTSG LNRTGKSCRL RWVNYLHPGL KRGKMTPQEE RLVLELHAKW 
50
GNRWSKIARK LPGRTDNEIK NYWRTHMRKK AQEKKRPVSP TSSFSNCSSS 
100
SVTTTTTNTQ DTSCHSRKSS GEVSFYDTGG SRSTREMNQE NEDVYSLDDI 
150
WREIDHSAVN IIKPVKDIYS EQSHCLSYPN LASPSWESSL DSIWNMDADK 
200
SKISSYFAND QFPFCFQHSR SPWSSG
250