Locus |
Common name |
Short description |
AT3G46640 |
PCL1, LUX |
PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3) |
>AT3G46640.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, EcoRI, HindIII, HpaI, KpnI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
BamHI
| G|GATCC |
357, 919 |
BglII
| A|GATCT |
90, 405 |
EcoRV
| GAT|ATC |
685, 800 |
NcoI
| C|CATGG |
923 |
NdeI
| CA|TATG |
784 |
PvuII
| CAG|CTG |
526 |
StyI
| C|C[AT][AT]GG |
923 |
Click here to view TAIR data
>AT3G46640.1 length:972
ATGGGAGAGG AAGTACAAAT GAGCGATTAC GATGTTTCCG GCGACGGAGA | 50 |
TAGGGTTTCT GAATGGGAGA TGGGATTACC AAGCGACGAA GATCTAGCAT | 100 |
CTCTTTCTTA CTCTCTGATT CCACCGAATT TGGCGATGGC GTTTAGTATC | 150 |
ACACCGGAGA GAAGCCGTAC GATTCAGGAT GTGAATCGTG CATCGGAGAC | 200 |
GACGCTCTCG TCGCTACGTG GTGGATCTTC AGGTCCAAAT ACCTCGTCGT | 250 |
CGAATAATAA CGTGGAGGAG GAAGATCGAG TTGGATCTAG CAGTCCTGGA | 300 |
TCGGATTCGA AGAAGCAAAA GACATCAAAC GGTGATGGAG ATGACGGTGG | 350 |
CGGTGTGGAT CCGGATTCGG CGATGGCGGC GGAAGAAGGA GATTCAGGAA | 400 |
CTGAAGATCT ATCTGGGAAA ACACTTAAAC GACCGCGTTT AGTGTGGACA | 450 |
CCGCAGCTAC ACAAGAGATT CGTTGACGTT GTAGCTCACT TAGGGATCAA | 500 |
AAACGCTGTT CCGAAGACGA TTATGCAGCT GATGAACGTT GAAGGATTAA | 550 |
CTCGTGAGAA CGTTGCGTCT CATCTTCAAA AGTATAGGCT TTACCTCAAA | 600 |
AGGATGCAGG GATTGACTAA TGAAGGTCCC TCTGCTTCGG ATAAGCTCTT | 650 |
CTCTTCAACA CCTGTTCCTC CACAGAGCTT CCAAGATATC GGTGGCGGTG | 700 |
GCGGTAGCAG CGGTAATGTT GGAGTGCCGA TTCCGGGGGC GTATGGAACG | 750 |
CAACAGATGA TGCAGATGCC AGTTTATGCA CATCATATGG GTATGCAAGG | 800 |
ATATCATCAT CAAAATCATA ATCATGATCC TTATCATCAG AATCATCGTC | 850 |
ATCATCATGG AGCTGGTGGA AATGGTGCGT TTGAGTCAAA TCCTTATATG | 900 |
ATGCAGCAGA ATAAGTTTGG ATCCATGGCT TCTTATCCTT CTGTTGGAGG | 950 |
TGGAAGCGCA AATGAGAATT AA | 1000 |
>AT3G46640.1 longest ORF length:323
MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI | 50 |
TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG | 100 |
SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT | 150 |
PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK | 200 |
RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT | 250 |
QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM | 300 |
MQQNKFGSMA SYPSVGGGSA NEN | 350 |
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