fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G46640 PCL1, LUX PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3)

>AT3G46640.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, HindIII, HpaI, KpnI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 357, 919
BglII A|GATCT 90, 405
EcoRV GAT|ATC 685, 800
NcoI C|CATGG 923
NdeI CA|TATG 784
PvuII CAG|CTG 526
StyI C|C[AT][AT]GG 923


Click here to view TAIR data

>AT3G46640.2 length:972
ATGGGAGAGG AAGTACAAAT GAGCGATTAC GATGTTTCCG GCGACGGAGA 
50
TAGGGTTTCT GAATGGGAGA TGGGATTACC AAGCGACGAA GATCTAGCAT 
100
CTCTTTCTTA CTCTCTGATT CCACCGAATT TGGCGATGGC GTTTAGTATC 
150
ACACCGGAGA GAAGCCGTAC GATTCAGGAT GTGAATCGTG CATCGGAGAC 
200
GACGCTCTCG TCGCTACGTG GTGGATCTTC AGGTCCAAAT ACCTCGTCGT 
250
CGAATAATAA CGTGGAGGAG GAAGATCGAG TTGGATCTAG CAGTCCTGGA 
300
TCGGATTCGA AGAAGCAAAA GACATCAAAC GGTGATGGAG ATGACGGTGG 
350
CGGTGTGGAT CCGGATTCGG CGATGGCGGC GGAAGAAGGA GATTCAGGAA 
400
CTGAAGATCT ATCTGGGAAA ACACTTAAAC GACCGCGTTT AGTGTGGACA 
450
CCGCAGCTAC ACAAGAGATT CGTTGACGTT GTAGCTCACT TAGGGATCAA 
500
AAACGCTGTT CCGAAGACGA TTATGCAGCT GATGAACGTT GAAGGATTAA 
550
CTCGTGAGAA CGTTGCGTCT CATCTTCAAA AGTATAGGCT TTACCTCAAA 
600
AGGATGCAGG GATTGACTAA TGAAGGTCCC TCTGCTTCGG ATAAGCTCTT 
650
CTCTTCAACA CCTGTTCCTC CACAGAGCTT CCAAGATATC GGTGGCGGTG 
700
GCGGTAGCAG CGGTAATGTT GGAGTGCCGA TTCCGGGGGC GTATGGAACG 
750
CAACAGATGA TGCAGATGCC AGTTTATGCA CATCATATGG GTATGCAAGG 
800
ATATCATCAT CAAAATCATA ATCATGATCC TTATCATCAG AATCATCGTC 
850
ATCATCATGG AGCTGGTGGA AATGGTGCGT TTGAGTCAAA TCCTTATATG 
900
ATGCAGCAGA ATAAGTTTGG ATCCATGGCT TCTTATCCTT CTGTTGGAGG 
950
TGGAAGCGCA AATGAGAATT AA
1000

>AT3G46640.2 longest ORF length:323
MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI 
50
TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG 
100
SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT 
150
PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK 
200
RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT 
250
QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM 
300
MQQNKFGSMA SYPSVGGGSA NEN
350