fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G47710 BNQ3, PRE4, bHLH161 BASIC HELIX-LOOP-HELIX PROTEIN 161, BANQUO 3 (.1)

>AT3G47710.1 genomic map

>>Show CDS map




Uncut enzymes: Acc65I, AccIII(BspMII), AgeI, AlwI, AlwNI, ApaI, ApaLI, AscI, AvaI, AvaII, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BssHII, BssSI, BstBI, BstXI, Bsu36I, BtrI, BtsI, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, FauI, FokI, FseI, FspI, HgaI, HindIII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NciI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PaeR7I, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PspOMI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, StuI, TliI, Tth111I, XbaI, XhoI, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 384
AccI GT|[AC][TG]AC 1512, 1544, 2641, 2795, 3196, 3833
AccII(FnuDII) CG|CG 887
AciI C|CGC 5417
AclI AA|CGTT 328, 527, 743, 4133, 5276
AfeI AGC|GCT 2737
AflII C|TTAAG 1827, 2167
AflIII A|CPuPyGT 2002, 2366, 3753
AhdI GACNNN|NNGTC 3629
AluI AG|CT 1670, 1682, 3965, 4033, 4077, 4685, 4691, 4826, 5916, 6159, 6209
Aor51HI(Eco47III) AGC|GCT 2737
ApoI Pu|AATTPy 112, 147, 403, 451, 476, 630, 697, 933, 1072, 1256, 1482, 1890, 2375, 2511, 2629, 2684, 2757, 3118, 3381, 3468, 3543, 3561, 4171, 4465, 5032, 5039, 5137, 5500, 5875, 5992, 6095
AseI AT|TAAT 269, 808, 1562, 2529, 2770, 2973, 3045, 3660, 5621
BamHI G|GATCC 419
BclI T|GATCA 4043, 5145, 6140
BfaI C|TAG 2327, 2621, 2942, 3083, 3315, 3627, 3644, 3704, 3963, 4002, 4980, 5062
BglII A|GATCT 1051, 2714
BsaAI PyAC|GTPu 2365, 5373, 5422
BsaBI GATNN|NNATC 6139
BsaHI GPu|CGPyC 384
BsaJI C|CNNGG 1269, 1784, 2790, 4225, 5222, 5315
BsaWI [AT]|CCGG[AT] 4261
BsiEI CGPuPy|CG 5383
BsiHKAI G[AT]GC[AT]|C 5889
BsiWI C|GTACG 1550
BslI CCNNNNN|NNGG 599, 2826, 5773
Bsp1286I G[GAT]GC[CAT]|C 1659, 5889
BspDI AT|CGAT 5109
BspHI T|CATGA 2116, 5996
BsrDI GCAATGNN| 1419, 4853, 6041, 6117
BsrFI Pu|CCGGPy 5385
BsrGI T|GTACA 883, 1181, 1999, 2918
BsrI ACTGGN| 3345, 4030
BssKI |CCNGG 3012
BstAPI GCANNNN|NTGC 1919
BstEII G|GTNACC 2603
BstF5I GGATGNN| 1992, 4051, 4640
BstNI CC|[AT]GG 3012
BstUI CG|CG 887
BstYI Pu|GATCPy 419, 1051, 1677, 2714, 4540
BstZ17I GTA|TAC 1544, 2795, 3196
BtgI C|CPuPyGG 2790, 5222
Cac8I GCN|NGC 852, 4499, 4506, 5411, 5417
Cfr10I [AG]|CCGG[TC] 5385
ClaI AT|CGAT 5109
DdeI C|TNAG 517, 834, 946, 1277, 1673, 2825, 3947, 4645, 4784, 4962, 4973, 6034
DpnI GA-CH3|TC 418, 1050, 1331, 1676, 1930, 2148, 2713, 2945, 3289, 4042, 4064, 4539, 4641, 5144, 5264, 6139
DpnII |GATC 418, 1050, 1331, 1676, 1930, 2148, 2713, 2945, 3289, 4042, 4064, 4539, 4641, 5144, 5264, 6139
DraI TTT|AAA 109, 735, 748, 1113, 2350, 3264, 3447, 4165, 4215, 4266
DraIII CACNNN|GTG 1624
EcoRI G|AATTC 1072, 5875, 5992
EcoRV GAT|ATC 3054, 5290
Fnu4HI GC|NGC 4502, 4693, 4825, 5270
HaeII PuGCGC|Py 2737, 5414
HaeIII GG|CC 5386, 5478
HhaI GCG|C 888, 2736, 5413
HinP1I G|CGC 888, 2736, 5413
HincII GTPy|PuAC 260, 3480, 5564, 6089
HinfI G|ANTC 253, 548, 818, 913, 966, 1019, 1118, 1273, 1628, 2112, 2119, 2157, 2381, 2663, 3835, 4157, 4355, 4427, 4672, 4681, 4977, 5281, 5959, 6006, 6012
HpaI GTT|AAC 260, 3480
HpaII C|CGG 4260, 5384
Hpy188I TCN|GA 61, 1486, 1785, 2371, 2711, 3302, 3594, 3632, 4703, 5142, 5546, 5792, 5962, 6009, 6101, 6131, 6171
Hpy99I CG[AT]CG| 385, 1664
HpyCH4III ACN|GT 24, 600, 674, 1547, 1701, 2245, 3033, 3476, 3686, 4315, 5088, 5223, 5799, 5825, 6219
HpyCH4IV A|CGT 327, 383, 526, 742, 2364, 4015, 4132, 4922, 5257, 5275, 5372, 5421, 5612
HpyCH4V TG|CA 849, 853, 1911, 2760, 2979, 3123, 3152, 3498, 3524, 3580, 3726, 3744, 3827, 3908, 4341, 4412, 4443, 4503, 4507, 4605, 4694, 4717, 4731, 4848, 5071, 5435, 5532, 5865
MboI |GATC 418, 1050, 1331, 1676, 1930, 2148, 2713, 2945, 3289, 4042, 4064, 4539, 4641, 5144, 5264, 6139
MfeI C|AATTG 1533, 2480
MseI T|TAA 1, 18, 108, 192, 237, 246, 259, 268, 279, 291, 441, 447, 470, 478, 542, 554, 596, 734, 739, 747, 788, 807, 900, 1112, 1375, 1446, 1561, 1581, 1606, 1716, 1777, 1792, 1826, 1861, 1892, 1897, 2055, 2077, 2166, 2239, 2332, 2349, 2411, 2415, 2446, 2454, 2459, 2499, 2528, 2769, 2866, 2897, 2972, 3002, 3018, 3044, 3048, 3263, 3372, 3384, 3446, 3479, 3617, 3639, 3659, 3664, 3674, 3818, 3926, 3932, 4164, 4173, 4193, 4214, 4244, 4265, 4311, 4383, 4468, 4517, 4525, 4790, 4841, 4863, 4935, 5028, 5102, 5159, 5169, 5189, 5496, 5515, 5556, 5606, 5620, 5629, 5728, 5782, 5833
MslI CAPyNN|NNPuTG 891, 3752
MspI C|CGG 4260, 5384
MwoI GCNNNNN|NNGC 1690, 1919, 4085, 4693, 5714
N.BstNBI GAGTCNNNN|N 553, 971, 2117, 4360, 6011
NcoI C|CATGG 2790
NdeI CA|TATG 909, 1039, 2307
NlaIII CATG| 230, 414, 851, 891, 1162, 1654, 2001, 2115, 2123, 2581, 2789, 2920, 3150, 3700, 3742, 3752, 3808, 4039, 4414, 4498, 4505, 4509, 4603, 5069, 5995
NlaIV GGN|NCC 419
NsiI ATGCA|T 854, 3153, 3745, 4444, 4508, 5072
NspI PuCATG|Py 852, 892, 2002, 2921, 3151, 3701, 3753, 4415, 4499, 4506, 4604
PacI TTAAT|TAA 2415, 3048
PciI A|CATGT 2002, 3753
PsiI TTA|TAA 1313, 1805, 3175, 3399, 3878, 3955, 4372, 4814, 5084
PspGI |CC[AT]GG 3012
PstI CTGCA|G 5866
RsaI GT|AC 882, 904, 972, 1080, 1180, 1549, 1616, 1698, 1845, 1998, 2829, 2917, 2939, 3086, 4127, 4240
Sau3AI |GATC 418, 1050, 1331, 1676, 1930, 2148, 2713, 2945, 3289, 4042, 4064, 4539, 4641, 5144, 5264, 6139
ScrFI CC|NGG 3012
SfcI C|TPuPyAG 2639, 2991, 5866
SmlI C|TPyPuAG 1517, 1827, 2167, 2689, 4624, 4689
SnaBI TAC|GTA 5373
SpeI A|CTAGT 3316, 3628
SphI GCATG|C 852, 4499, 4506
SspI AAT|ATT 207, 1108, 1157, 1565, 1734, 2526, 3681, 3920, 4381, 4392, 4409, 5724
StyI C|C[AT][AT]GG 1269, 2790, 4225, 5315
SwaI ATTT|AAAT 736
Taqƒ¿I T|CGA 386, 428, 688, 936, 1222, 2732, 4484, 5108, 5262, 5503
TfiI G|A[AT]TC 253, 818, 913, 1019, 1273, 1628, 2157, 2381, 2663, 4157, 4427, 4672, 4681, 4977, 5281, 5959, 6012
TseI G|C[AT]GC 4502, 4693, 4825, 5270
Tsp45I |GT[CG]AC 184, 381, 4452, 5641
Tsp509I |AATT 16, 66, 111, 146, 266, 270, 293, 402, 450, 468, 475, 480, 540, 629, 696, 724, 737, 753, 796, 805, 932, 1071, 1227, 1255, 1261, 1315, 1481, 1532, 1559, 1604, 1724, 1794, 1889, 1894, 1946, 1956, 1969, 2051, 2060, 2199, 2374, 2392, 2413, 2439, 2452, 2457, 2479, 2497, 2510, 2530, 2628, 2650, 2683, 2705, 2756, 2860, 2868, 2899, 2928, 2970, 3026, 3046, 3073, 3109, 3117, 3370, 3380, 3405, 3411, 3467, 3542, 3560, 3649, 3657, 3661, 3721, 3729, 3855, 3934, 4143, 4170, 4175, 4319, 4368, 4464, 4470, 4515, 4520, 4527, 4725, 4792, 4843, 5031, 5038, 5136, 5150, 5161, 5322, 5471, 5494, 5499, 5874, 5991, 6094
TspRI NNCA[CG]TGNN| 5802
XcmI CCANNNNN|NNNNTGG 5476
XmnI GAANN|NNTTC 1483, 2668, 3470, 3805


Click here to view TAIR data

>AT3G47710 genomic sequence (4000-4128,4577-4726,) length:6226
ttttaacata tcaagtaaat taaaactgta atggcattct caaagaaatg 
50
acattctttt atcggaaaat tatcactaaa atctccaact tttatttgaa 
100
aacatttgtt taaattctca acatccaacg aaacgaaata aatatcaaat 
150
ttatgttgat ttttctaata aatatcaaac ttatgtgact ttcttaataa 
200
atacaaaata tttgctaatg gtcatattag acatgatgtt aagtagatta 
250
acagattccg ttaacaaaat taatttttta ttaacatacc cgttaattca 
300
aaacattatt gctttctata acaacaaaac gttattgttt tctataacaa 
350
caaagcgaaa aaaaaacaaa aaaaaaacaa agtgacgtcg agcaaaatct 
400
ccaaattcaa tcaatcatgg atccccaaat cgagcaaaat ctttaacctt 
450
aaattcctat atgacttgaa attaaaaatt taattgaccc gttatgacaa 
500
aaagacgatg ttttattctt agagagaacg ttgtcatttt caattaacga 
550
gtctattaag agaaaatgaa ctttgatagc aggatttgtt atcccactta 
600
acggtatgtc taatatggct atatcaacaa aattttatta tttatttgga 
650
aagtcaataa aagtttggta ttttacagta tttgaaaaat cgacagaaat 
700
ttgatattta ttttgtttcg tggaaaattg aggatttaaa ttaacgtttt 
750
aaacaatttg aggattttga tgacattgtt tccattcttt taagccaaat 
800
taggataatt aatcaatgga atcgcaccag caaactcagg attagtattt 
850
tgcatgcatt tcatataaaa ccgagagtgt gatgtacacg cgcatgtata 
900
tttaagtaca tatgattcct aaaataaaca ataaatttcg agttgtctaa 
950
ggaaatgtgt agtattgagt ctcgtacata tttgtatata taaatcatct 
1000
tacacaataa catagaagcg aatcattgag acagaaacca tatggcaaag 
1050
agatctccgt aatctttctt ggaattctat cgtactaaaa tctaataaag 
1100
ttctatcaat attttaaaga ctccttcaac ttgggtttct tcacactttc 
1150
aaaaacaata tttcatgtgt tttctttttg tgtacaacct ctaaacttgg 
1200
ttggatataa aaaacacaca acatcgaaaa ttggttgggt gttagtgtgg 
1250
gctaaaaatt ctaatttccc aaggattctt agtttgtgta tttctaatgt 
1300
cctttgtatt tcttataatt ttgtttggca cggatcatct ctgttttagg 
1350
ttctctactt tttgtaatac ataatcttaa tcatctaatg atattatttg 
1400
gaatgaaaaa agtggagcaa tgacatttag caagaaacaa gtttctgtta 
1450
aaaaaaaaaa aagtttctgt ttacatttga aaaatttcag aactgattat 
1500
tacaatgaga agtagacttg agaacttgta atcaattgag tgtgtatacc 
1550
gtacgctaaa aattaatatt atattagaaa agttaaacca aagaaataaa 
1600
aactaaatta aaagagagta cacatcgtga ttcttcgctg tatattccaa 
1650
aaactcatgt gccccgacga gagctgagat ccaagctgac cacgcaatag 
1700
taccgtatat tgattagtta atcacaattc acaaatatta ttatttggat 
1750
atttttgggt tacattttat agtttctttt aatcctcgga tttttaatta 
1800
cggattataa aaaaccaaaa caatacctta agttagtagt ttgaaagtac 
1850
acatatacat atttaatcac acaagttgag acgaccaaaa aatttaattt 
1900
aatcacatag tttgcaagat gtgcttgttt tgatctgtca aaagaggaat 
1950
tgtctctaat ttatttccaa aattatgaac actcatatac ggatgtaatg 
2000
tacatgtata acttttattt attgtttcac cttatcaaaa aaaaaaaaaa 
2050
acaattttaa taattgttac acaaatgatt aaacatattt tatcgggtaa 
2100
tgatatacta atgagtcatg agtccatgtg attttttatt ttgttttttg 
2150
atctaaagat tcataactta agtattctgg tgtaaacata aaaagaaagc 
2200
aatttttttg aataatacaa aaaagaaatc gtttattttc ttaaaactgt 
2250
aaataaaatc aaatgaaaat gtaaaataaa ataataaaaa aatgtaaaac 
2300
aatccacata tgaaaaaaaa atctattact agattaaatc taataacgat 
2350
ttaaaaatag acaatacgtg ttcggaattt ggaatcaaag tccaattttc 
2400
tcttctaact tcttaattaa aaaacaaact tttagtttac aatttattta 
2450
atgaattaaa ttaaaaatat attttttctc aattgttggt gtaaccataa 
2500
ttaactaatg gaattttttg gagaaaatat taattacttc aataaaacga 
2550
atgttattta ttatctaaat ataaagatat tacatgatgg gaagagagac 
2600
gggttaccat atagtttgat acctagacaa atttctgtct gtagactata 
2650
aaattattta taggaatcat ttccattgat tagaaattct tgagatatag 
2700
tgataaaatt gtcagatcta aatggataaa taatcgagcg cttgattgat 
2750
tattccaaat ttgcaatata ttaatcaact gattgatgcc catggtatac 
2800
aaataaaaat ggaagaaaga ccaaactaag gtacactcaa aatggaaaag 
2850
actgatatta gaattgttta atttcatctc taataaaact aaatcaactt 
2900
aattatttat gtttgtctgt acatgctcaa attagtatat gtactagatc 
2950
aagtatgtaa ctatataaat aaattaatct tgcaatataa ctatagaagt 
3000
tgattaacat ttccaggagt taatcctaat tttacagttc ttggattaat 
3050
taagatatca tacaaactaa tcataatttg tagtctagta ccaaagtttg 
3100
tattatcacc aattccagaa tttatgcaag tttgccgata agtatgacaa 
3150
acatgcatac atattctctt tgtcttataa acccaaaatg ttttagtata 
3200
ctctattcgt gccaaaaaaa aatatgaaag aaggtatcct ccaactataa 
3250
tcaaacatca ccttttaaat gatttactaa aatggcacaa gatcactctt 
3300
gttctgaagt tggttactag tgaaacatat atagaaaaat gaaaactgga 
3350
ttagcaaaaa aaataatgtg gaattaaaat gaattttaat cttctatttt 
3400
ataatgaatt gtaattggat aaatggaaat gtttttccta tataagttta 
3450
aaaacataac gagacgaaaa ttttctaccg ttaacaacaa agatgttctt 
3500
gcaaataaga taagcgtttt tttattgcac aaatatatct ataaatttta 
3550
gataaaatat aaattcttac ccattgagat ttgcataata ctattcagag 
3600
tgtttttttt ccctttcgtt aaagactact agtcagagtg ttaatctagt 
3650
aattcaccaa ttaatttaac tatacttaaa aatattacag tttttaggaa 
3700
acatgctaga aaaaacatat ataattttgc aattatatta ttccatgcat 
3750
acacatgtag agccaaaaac ggagaaaaat cttctatata aacacaagtt 
3800
gaaaccattc atgtttattt taagcagttg cagtagactc ttccacttct 
3850
gtattcaatt cttccttctt ttttctctta taatataaat aacatacaaa 
3900
gaaaatactt gcactcacaa atattgatta aagttaatta gtgaacccta 
3950
agatttataa atctctagct atactctacc atatcatata tattacataA 
4000
TGTCTAGCAG AAAATCACGT TCAAGACAAA CTGGAGCTTC CATGATCACG 
4050
GATGAACAAA TCAACGATCT TGTCCTCCAG CTTCATCGGC TTCTCCCCGA 
4100
ACTTGCTAAC AACAGACGCT CTGGAAAGgt acaacgttct aatcaatttt 
4150
tcattatgat tccttttaaa aaatttaatt tcctctttca aaccttaaat 
4200
cttttctaaa cctttttaaa tcttccttgg attagtagtg ggtacttaaa 
4250
agaacaaacc tccggtttaa aaaaaataaa aataataact aatatatatc 
4300
ctccatcaaa gtttaacagt aattctttca tctttctgtt gttgcaaaca 
4350
aacgagagtc tttagttaga attataaata aatattaaac taatattcca 
4400
tatattccaa tattgcatgt atgtattgat tcatttgatt gtgatgcatt 
4450
ttgtgacgag tgctaaattt taatttccaa actaatcgac aataaatagc 
4500
atgctgcatg catgataatt aaattgttaa ttatatataa gatccttctt 
4550
cttatcaata tattggttac tttcagGTTT CAGCATCAAG GGTATTACAA 
4600
GAGACATGCA GTTACATAAG GAACTTGAGC AAAGAAGTGG ATGATCTTAG 
4650
TGAAAGATTG TCTCAACTTT TGGAATCAAC TGATTCAGCT CAAGCTGCAC 
4700
TAATCCGAAG TTTGCTTATG CAGTAGaatt agtgcaataa acgaaggata 
4750
tttttttctt ttcttttttt tgaaaaaatg tcttctcagt tttaattccc 
4800
cttcttattg tatttataat gtctggcagc ttgtgtcccc tgttaattat 
4850
gcaatgtttt atttttaata tatgtagggt tttgtttttg tcagttgttg 
4900
aacgaagcaa atggtttggg tttacgttca cattatttaa ggcaacacac 
4950
tcaatatatg ggcttaggta tttcttagat tctaggcatt ccaaccaaat 
5000
ccatcacatt ttagtagcaa aaacattgat taaattttga atttacgaga 
5050
agaacaatgt tttctagtgt catgcatata cgattataac ggtgtttttg 
5100
tagttaatat cgataggaac taaactaacg caagtcaaat tttctgatca 
5150
aaattagtcg ttaatttcgc ttaatggtat aaagtatatt ttaagaagga 
5200
ataaaatatg ctaataagcc cccacggttt ccatttctgg taacaagaat 
5250
accattcaac gtctcgatca gcagcaacgt tgaatcgttg atatctatat 
5300
atagaagtat agaaccaagg ggtaatttgg tcattccagt tctaacccac 
5350
ttctattaca agagcagttt actacgtaaa aacgaccggc cttccacttt 
5400
cccgaaaaca gccagcgccc gcacgtagag atttactgca tattcagttt 
5450
tcagtaaata aatagtccac aaaattagtg gccttgcgtg taaaaaatta 
5500
aatttcgaga tgctgtttaa taaatgtatt tattgcaaat aagaaatcag 
5550
atagccttta atagttgaca aaaaatagcc ttttatattt acaagttcgt 
5600
gtatttgtta ataacgtggg attaatgagt ttaatgtaat cgtgacaaaa 
5650
acaaaagtgg gattagtgta atcgtgtgaa tgtggacact tctccttcac 
5700
ggcaaaaggc acaagacgca acaaatattt taatagaaaa gaaaaaaaac 
5750
gaaaacagac aacaaaaccc aaaacaggaa gacttaaaca aatcagaaca 
5800
cagtgtaaga aaaatctttt ccataactgt atttttaact attcatatat 
5850
atatgtttag tctctctgca gtttgaattc aaacatttgt gctctctcat 
5900
ctcaaaaact acactaaagc tataaatcat caatcatcta aaatcttcaa 
5950
aaaggttttg attctgactt cttggttttc ttttttgtaa cgaattcatg 
6000
atttttgagt ctgattctgt gtttcctttt gtttctcagc aATGGATTAT 
6050
TCAAAAACCG AAGAAACACC GATAAACGAA GAACAAGGGT CAACAAATTC 
6100
ATCTGAAAGC AGAAGCAATG AAGAGTTATT CTCTGATTGT GATCAACAAC 
6150
ATTCTTCCAT AGCTAACGAG TTCGGACTAA CGGAGTTGCC TAAAGACGAT 
6200
AAAGTTTACG AGCTTATCTA CCGTCA
6250