fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G47870 ASL29, SCP, LBD27 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1)

>AT3G47870.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 48
EcoRV GAT|ATC 940
HpaI GTT|AAC 556, 661
PstI CTGCA|G 651


Click here to view TAIR data

>AT3G47870.1 length:987
ATGAGCAATA CAAAACACAT CCACAAAGGG TTACAGGAGA GGCTTTTAGA 
50
TCTTCTCTTG ATCGCTCTTA TAGTTTACAT GACTCTTAAA GGCGGCACGA 
100
GTGGGGCTTG TGCCGCGTGC AAGTACCAAC GTAGACGCTG CGCCGCGGAC 
150
TGCCCCCTCG CGCCTTACTT CCCAGCCGAA CAACCGAAAC TTTTCCAAAA 
200
CGTTCACAGG CTATTCGGCG TAAGAAGTAT CGTCAAGATC CTCGAAAAAC 
250
TAGACGAAAC TCAGAAACCA GAAGCAATGA AATCAATCAT CTTCCAGTCT 
300
TATGTCCGTG ACCGTTCTCC TGTCCACGGT TGCCTCGGCG TCACGCAACA 
350
ACTTCAATAC ATGATCTGGT TTGCTGAAGA AGAACTCAAA GCTGTCAATT 
400
CTCAATTACA ACTATATCGC TCTCAACCAC AAAACGGTCA AAATCAAAAC 
450
CAAAACCATA ATCATAATCA GATGATTCAT GAGCTTGGTA GTGATCATAA 
500
TAAGCAGCAA GAAGATGTTA CATCGCAGCA GCTTGACTTG GGTATGGGAC 
550
TTAACGTTAA CAATAATCAG AGCAATGTCG TTACACCATT CTTTAGTTCA 
600
TTATTACCAG TTTCCGAAAC ACAACAGCCA CAAATGTCTT ACACTTATAG 
650
CTGCAGTGAG GTTAACAACA ATGGCTATAG TCCTCCTGCT TATAATACAG 
700
ATTCGGGCAA GGAGATTCTG ACCAACAATA ACAATGTTTG GGGTGATCAG 
750
AATCGATTTC TGTATAACAA CAACAATGGA GGAGGATACA GCAACCAAAA 
800
CGAGAGCTGT CATGAGATGA AGAGTAACGG TGTAATGGCA ATACAATCAC 
850
AGCTCGTAAA TCTGCAAATG GTATCAAATC ATCAGCGAGT GGAAGAAGAA 
900
GAAGCTGATC ATGAATACGA TGAACTCCAT CAGTTTCTTG ATATCATTGA 
950
CGATAGGCAA TCATTTGGGG ATTCTAAAGA AGCGTAG
1000

>AT3G47870.1 longest ORF length:328
MSNTKHIHKG LQERLLDLLL IALIVYMTLK GGTSGACAAC KYQRRRCAAD 
50
CPLAPYFPAE QPKLFQNVHR LFGVRSIVKI LEKLDETQKP EAMKSIIFQS 
100
YVRDRSPVHG CLGVTQQLQY MIWFAEEELK AVNSQLQLYR SQPQNGQNQN 
150
QNHNHNQMIH ELGSDHNKQQ EDVTSQQLDL GMGLNVNNNQ SNVVTPFFSS 
200
LLPVSETQQP QMSYTYSCSE VNNNGYSPPA YNTDSGKEIL TNNNNVWGDQ 
250
NRFLYNNNNG GGYSNQNESC HEMKSNGVMA IQSQLVNLQM VSNHQRVEEE 
300
EADHEYDELH QFLDIIDDRQ SFGDSKEA
350