fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G49530 NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1)

>AT3G49530.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, NcoI, NheI, NotI, PacI, PvuII, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BamHI G|GATCC 787, 936
KpnI GGTAC|C 442
NdeI CA|TATG 1313
PstI CTGCA|G 1368, 1397
SacI GAGCT|C 374
SalI G|TCGAC 1381
StyI C|C[AT][AT]GG 163, 379
XhoI C|TCGAG 816


Click here to view TAIR data

>AT3G49530.1 length:1410
ATGAATCAGA ATCTTCATGT ATTATCAATG GATTCGTTAC CAGTTGGATT 
50
AAGATTCCGT CCAACAGACG AGGAGCTAAT CCGTTACTAT CTCCGTAGGA 
100
AAATCAACGG TCACGATGAC GACGTCAAAG CTATCCGTGA GATCGATATT 
150
TGCAAATGGG AACCTTGGGA TTTACCTGAT TTTTCTGTGA TCAAAACTAA 
200
AGACTCAGAG TGGCTCTACT TCTGTCCATT GGATCGGAAG TATCCGAGTG 
250
GAAGTAGACA GAACCGGGCA ACAGTTGCAG GGTACTGGAA AGCCACAGGA 
300
AAAGACCGGA AGATAAAATC CGGTAAGACT AACATTATTG GTGTGAAGAG 
350
AACTCTAGTT TTCCACGCGG GTAGAGCTCC TAGGGGGACA CGAACCAATT 
400
GGATTATTCA TGAGTATCGT GCCACGGAGG ATGATCTTAG TGGTACCAAT 
450
CCTGGCCAGA GTCCGTTTGT TATATGCAAA TTGTTCAAGA AAGAAGAACT 
500
GGTTTTAGGG GAAGAAGATT CGAAGTCAGA TGAAGTTGAA GAACCTGCTG 
550
TCTCGTCTCC AACTGTCGAA GTGACTAAGT CAGAAGTATC TGAGGTAATT 
600
AAAACAGAAG ACGTGAAGCG TCATGACATA GCAGAATCTT CTCTTGTAAT 
650
CTCTGGAGAT TCTCATAGTG ATGCTTGTGA TGAGGCTACA ACCGCAGAGC 
700
TTGTAGATTT TAAATGGTAT CCGGAATTGG AGTCCTTAGA TTTCACGCTG 
750
TTCTCTCCAT TACACTCTCA AGTCCAATCT GAGCTTGGAT CCTCTTACAA 
800
CACATTCCAG CCTGGCTCGA GTAATTTTTC AGGGAACAAC AACAACAGCT 
850
TCCAAATCCA GACTCAGTAT GGTACAAATG AAGTAGATAC GTATATATCT 
900
GATTTTCTTG ATTCGATTCT CAAGAGCCCA GACGAGGATC CAGAGAAGCA 
950
CAAGTATGTT TTGCAAAGTG GTTTTGATGT TGTAGCACCA GATCAGATTG 
1000
CGCAAGTGTG TCAACAGGGC TCAGCAGTTG ACATGAGCAA TGATGTTTCA 
1050
GTGACGGGTA TCCAGATTAA GAGTCGCCAG GCACAACCCT CAGGTTATAC 
1100
CAATGACTAT ATAGCGCAGG GAAATGGTCC AAGAAGGCTG CGTCTGCAAA 
1150
GTAACTTTAA TGGCATTAAC ACGAAGAATC CTGAGCTTCA AGCTATAAAG 
1200
AGAGAGGCTG AGGACACGGT TGGAGAAAGT ATAAAGAAAA GGTGTGGAAA 
1250
GCTAATGAGA TCAAAGAACG TGACCGGTTT TGTGTTTAAA AAGATTACGT 
1300
CGGTGAAATG TTCATATGGA GGACTCTTTA GGGCGGCAGT AGTTGCAGTT 
1350
GTGTTCTTGA TGTCAGTCTG CAGTCTAACC GTCGACTTCA GAGCATCTGC 
1400
AGTGTCCTGA 
1450

>AT3G49530.1 longest ORF length:469
MNQNLHVLSM DSLPVGLRFR PTDEELIRYY LRRKINGHDD DVKAIREIDI 
50
CKWEPWDLPD FSVIKTKDSE WLYFCPLDRK YPSGSRQNRA TVAGYWKATG 
100
KDRKIKSGKT NIIGVKRTLV FHAGRAPRGT RTNWIIHEYR ATEDDLSGTN 
150
PGQSPFVICK LFKKEELVLG EEDSKSDEVE EPAVSSPTVE VTKSEVSEVI 
200
KTEDVKRHDI AESSLVISGD SHSDACDEAT TAELVDFKWY PELESLDFTL 
250
FSPLHSQVQS ELGSSYNTFQ PGSSNFSGNN NNSFQIQTQY GTNEVDTYIS 
300
DFLDSILKSP DEDPEKHKYV LQSGFDVVAP DQIAQVCQQG SAVDMSNDVS 
350
VTGIQIKSRQ AQPSGYTNDY IAQGNGPRRL RLQSNFNGIN TKNPELQAIK 
400
REAEDTVGES IKKRCGKLMR SKNVTGFVFK KITSVKCSYG GLFRAAVVAV 
450
VFLMSVCSLT VDFRASAVS
500