fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G49950 GRAS family transcription factor (.1)

>AT3G49950.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 849
HpaI GTT|AAC 715, 871
NcoI C|CATGG 470
SpeI A|CTAGT 582
StyI C|C[AT][AT]GG 470


Click here to view TAIR data

>AT3G49950.1 length:1233
ATGACCAAAA CCCGGATTCT CAACCCGACC CGATTCCCTT CTCCCAAACC 
50
CTTACGTGGC TGCGGCGACG CTAACTTCAT GGAACAGCTC CTCCTTCACT 
100
GCGCCACCGC CATAGACTCC AACGACGCTG CATTAACTCA CCAAATCCTC 
150
TGGGTCCTCA ACAACATCGC TCCACCAGAC GGTGACTCCA CCCAACGTCT 
200
TACATCCGCA TTCCTCCGCG CGTTGCTCTC ACGCGCCGTC TCCAAAACCC 
250
CTACACTATC ATCCACCATT AGCTTCCTAC CTCAGGCCGA TGAACTCCAT 
300
CGTTTCTCAG TCGTGGAGTT AGCCGCTTTC GTAGACCTCA CTCCGTGGCA 
350
CCGGTTCGGA TTCATTGCAG CCAACGCCGC GATCTTAACC GCCGTTGAAG 
400
GTTACTCAAC GGTTCACATC GTTGACTTAA GTTTGACTCA TTGTATGCAA 
450
ATCCCTACTC TTATAGACGC CATGGCAAGC CGACTCAACA AACCTCCTCC 
500
GCTTCTTAAA CTCACCGTCG TCTCTTCCTC CGACCACTTC CCACCATTCA 
550
TCAACATCTC CTACGAAGAA CTCGGATCTA AACTAGTCAA CTTCGCCACC 
600
ACACGAAACA TTACAATGGA GTTCACAATC GTACCTTCTA CTTACTCCGA 
650
TGGCTTCTCC TCCCTCTTAC AACAGTTACG GATTTATCCT TCTTCATTCA 
700
ACGAAGCTCT CGTCGTTAAC TGTCACATGA TGCTCCGTTA CATCCCTGAA 
750
GAACCCCTAA CTTCATCATC ATCATCGCTC CGAACAGTTT TCTTGAAACA 
800
ACTCCGATCT TTGAATCCAA GAATCGTAAC CCTAATCGAA GAAGACGTAG 
850
ATCTCACATC GGAGAACTTG GTTAACCGGT TAAAATCGGC GTTTAACTAC 
900
TTCTGGATTC CGTTCGATAC GACGGACACG TTTATGAGTG AGCAGAGACG 
950
GTGGTACGAG GCGGAGATAA GTTGGAAGAT AGAAAACGTG GTGGCGAAGG 
1000
AAGGTGCGGA GAGAGTGGAG AGGACGGAGA CGAAGAGACG GTGGATAGAG 
1050
AGAATGAGAG AGGCTGAGTT CGGTGGAGTT AGGGTTAAAG AAGATGCGGT 
1100
GGCGGATGTG AAGGCGATGC TGGAGGAGCA CGCTGTCGGG TGGGGAATGA 
1150
AGAAGGAAGA CGACGACGAG AGTCTCGTGC TGACGTGGAA AGGTCATAGT 
1200
GTTGTGTTTG CTACCGTTTG GGTTCCCATT TAA
1250

>AT3G49950.1 longest ORF length:410
MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL 
50
WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH 
100
RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ 
150
IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT 
200
TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE 
250
EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY 
300
FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE 
350
RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS 
400
VVFATVWVPI 
450