fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G50650 SCL7 GRAS family transcription factor (.1)

>AT3G50650.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 911
HindIII A|AGCTT 875, 1126
SalI G|TCGAC 362
StyI C|C[AT][AT]GG 1580
XbaI T|CTAGA 1131


Click here to view TAIR data

>AT3G50650.1 length:1629
ATGGCGTATA TGTGCACCGA CAGCGGAAAC TTAATGGCTA TAGCACAACA 
50
ACTCATCAAA CAGAAGCAGC AACAACAATC ACAACATCAA CAACAAGAAG 
100
AACAAGAACA AGAACCCAAC CCCTGGCCCA ATCCATCCTT CGGGTTTACT 
150
CTTCCCGGTT CGGGTTTCTC CGACCCGTTT CAAGTAACCA ACGACCCAGG 
200
TTTTCACTTT CCACACCTGG AGCATCATCA AAACGCAGCC GTCGCTTCCG 
250
AGGAGTTTGA CTCCGACGAG TGGATGGAGA GTTTGATCAA CGGTGGAGAT 
300
GCGTCACAAA CCAATCCAGA CTTCCCAATC TACGGCCATG ATCCATTCGT 
350
CTCATTCCCG AGTCGACTCA GTGCTCCTTC ATATCTCAAC CGAGTCAACA 
400
AAGATGACTC AGCGAGTCAA CAACTCCCTC CGCCACCAGC TTCCACCGCT 
450
ATATGGTCTC CATCTCCGCC ATCACCACAA CATCCTCCTC CTCCCCCGCC 
500
GCAGCCGGAT TTTGATCTAA ACCAGCCGAT TTTTAAAGCT ATCCACGATT 
550
ATGCACGTAA ACCGGAAACT AAACCGGACA CACTAATTCG GATCAAAGAA 
600
TCCGTGTCCG AATCAGGCGA CCCGATACAA CGAGTCGGGT ATTACTTCGC 
650
AGAAGCTCTG TCTCATAAAG AAACAGAGTC TCCGTCGTCA TCGTCGTCGT 
700
CATCCCTAGA AGATTTCATT CTCTCATACA AAACCTTAAA CGACGCATGT 
750
CCATATTCAA AGTTCGCTCA TTTAACAGCG AATCAAGCAA TTCTCGAAGC 
800
TACGAATCAA TCAAACAACA TTCACATAGT CGATTTCGGG ATTTTTCAAG 
850
GTATTCAATG GTCTGCTCTG TTACAAGCTT TAGCGACCCG TTCTTCTGGT 
900
AAACCCACCC GGATCCGGAT TTCGGGTATA CCCGCTCCGT CTCTAGGAGA 
950
CTCACCGGGA CCGTCTCTGA TCGCTACGGG AAACCGTCTC CGTGATTTCG 
1000
CGGCGATTTT GGATCTCAAT TTCGAGTTTT ATCCGGTTCT GACTCCGATT 
1050
CAATTACTAA ACGGGTCAAG TTTTCGGGTT GACCCGGATG AGGTTTTGGT 
1100
TGTGAATTTT ATGCTTGAGC TTTATAAGCT TCTAGATGAA ACAGCGACGA 
1150
CTGTTGGTAC GGCGCTCCGG TTAGCTAGAT CGTTAAACCC GAGGATTGTG 
1200
ACGCTTGGAG AATACGAAGT CAGTTTAAAC CGGGTTGAAT TTGCTAACCG 
1250
GGTTAAGAAC TCTCTCCGGT TTTATTCCGC GGTTTTTGAA TCGCTTGAAC 
1300
CGAATTTGGA TCGAGATTCG AAAGAAAGGC TGAGAGTGGA GAGAGTGTTG 
1350
TTCGGTAGGA GGATTATGGA TTTGGTCCGA TCAGATGATG ATAATAATAA 
1400
ACCGGGAACC CGGTTTGGGT TAATGGAGGA GAAAGAACAA TGGAGAGTGT 
1450
TGATGGAGAA AGCTGGATTT GAGCCGGTTA AACCGAGTAA TTACGCGGTT 
1500
AGCCAAGCGA AGCTGCTACT ATGGAACTAC AATTATAGTA CATTGTATTC 
1550
ACTTGTTGAA TCGGAGCCAG GTTTCATCTC CTTGGCTTGG AACAATGTGC 
1600
CTCTCCTCAC CGTTTCCTCT TGGCGTTGA
1650

>AT3G50650.1 longest ORF length:542
MAYMCTDSGN LMAIAQQLIK QKQQQQSQHQ QQEEQEQEPN PWPNPSFGFT 
50
LPGSGFSDPF QVTNDPGFHF PHLEHHQNAA VASEEFDSDE WMESLINGGD 
100
ASQTNPDFPI YGHDPFVSFP SRLSAPSYLN RVNKDDSASQ QLPPPPASTA 
150
IWSPSPPSPQ HPPPPPPQPD FDLNQPIFKA IHDYARKPET KPDTLIRIKE 
200
SVSESGDPIQ RVGYYFAEAL SHKETESPSS SSSSSLEDFI LSYKTLNDAC 
250
PYSKFAHLTA NQAILEATNQ SNNIHIVDFG IFQGIQWSAL LQALATRSSG 
300
KPTRIRISGI PAPSLGDSPG PSLIATGNRL RDFAAILDLN FEFYPVLTPI 
350
QLLNGSSFRV DPDEVLVVNF MLELYKLLDE TATTVGTALR LARSLNPRIV 
400
TLGEYEVSLN RVEFANRVKN SLRFYSAVFE SLEPNLDRDS KERLRVERVL 
450
FGRRIMDLVR SDDDNNKPGT RFGLMEEKEQ WRVLMEKAGF EPVKPSNYAV 
500
SQAKLLLWNY NYSTLYSLVE SEPGFISLAW NNVPLLTVSS WR
550