fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G50700 ATIDD2 indeterminate(ID)-domain 2 (.1)

>AT3G50700.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HpaI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 363
EcoRI G|AATTC 1170
HindIII A|AGCTT 268
KpnI GGTAC|C 645
NcoI C|CATGG 262
StyI C|C[AT][AT]GG 262


Click here to view TAIR data

>AT3G50700.1 length:1359
ATGCCGGTAG ATTTAGATAA CTCCTCCACA GTTTCCGGTG AAGCAAGTGT 
50
TTCAATCTCA TCCACCGGAA ACCAAAACCC ACTTCCAAAC TCCACCGGAA 
100
AGAAGAAACG TAACCTCCCT GGCATGCCTG ATCCAGAGTC AGAAGTTATA 
150
GCTTTATCAC CAAAAACATT ACTAGCAACA AACAGATTTG TTTGTGAAAT 
200
CTGTAACAAA GGGTTTCAAA GAGACCAGAA TCTTCAACTT CATCGTCGTG 
250
GACACAATTT ACCATGGAAG CTTCGTCAGA AATCAAACAA AGAAGTGAAG 
300
AAAAAAGTCT ATGTTTGTCC TGAAGTTAGT TGTGTTCATC ACGACCCTTC 
350
ACGTGCTTTA GGAGATCTAA CTGGAATCAA GAAACACTTT TGTCGGAAAC 
400
ATGGTGAGAA GAAGTGGAAA TGTGATAAAT GTTCTAAGAA ATACGCTGTT 
450
CAATCTGATT GGAAAGCTCA TTCCAAGATT TGTGGTACTA AAGAGTATAA 
500
ATGTGATTGT GGTACTCTGT TTTCTAGGAG GGATAGTTTT ATAACGCATA 
550
GAGCTTTTTG TGATGCTTTG GCTGAAGAAA ATGCGAGAAG TCATCATAGT 
600
CAGAGTAAGA AACAGAATCC TGAAATTTTG ACCCGGAAAA ACCCGGTACC 
650
CAACCCGGTT CCTGCTCCGG TGGATACTGA GTCTGCTAAA ATCAAATCCT 
700
CCTCGACTTT AACAATTAAG CAATCAGAAT CTCCAAAAAC CCCTCCTGAA 
750
ATCGTTCAAG AAGCTCCAAA ACCGACCAGT TTAAATGTTG TTACAAGCAA 
800
CGGTGTTTTC GCAGGCTTAT TCGAATCTTC CTCGGCTTCT CCAAGTATAT 
850
ACACAACATC GTCTTCTTCG AAGAGTCTTT TCGCGTCATC TTCGTCCATT 
900
GAACCTATCT CTTTGGGTCT TTCAACAAGT CATGGATCAT CCTTTCTTGG 
950
GTCAAACCGG TTCCACGCTC AGCCCGCGAT GTCAGCAACC GCTTTACTTC 
1000
AAAAAGCAGC TCAAATGGGA GCAGCTTCTT CAGGAGGTTC ATTGCTTCAC 
1050
GGGTTAGGGA TAGTTTCATC CACTTCAACT TCTATAGACG CAATAGTCCC 
1100
TCATGGACTA GGATTAGGAC TGCCTTGTGG TGGCGAAAGC AGCTCGGGTT 
1150
TAAAAGAGCT TATGATGGGG AATTCATCGG TGTTTGGTCC GAAACAAACG 
1200
ACATTAGACT TCCTCGGTTT AGGTAGAGCG GTTGGTAACG GAAATGGTCC 
1250
AAGTAACGGA CTATCTACTC TAGTCGGAGG AGGAACCGGC ATCGATATGG 
1300
CAACAACATT TGGATCAGGA GAGTTTTCAG GGAAAGACAT TAGTAGAAGA 
1350
AAATCATAA
1400

>AT3G50700.1 longest ORF length:452
MPVDLDNSST VSGEASVSIS STGNQNPLPN STGKKKRNLP GMPDPESEVI 
50
ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQKSNKEVK 
100
KKVYVCPEVS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV 
150
QSDWKAHSKI CGTKEYKCDC GTLFSRRDSF ITHRAFCDAL AEENARSHHS 
200
QSKKQNPEIL TRKNPVPNPV PAPVDTESAK IKSSSTLTIK QSESPKTPPE 
250
IVQEAPKPTS LNVVTSNGVF AGLFESSSAS PSIYTTSSSS KSLFASSSSI 
300
EPISLGLSTS HGSSFLGSNR FHAQPAMSAT ALLQKAAQMG AASSGGSLLH 
350
GLGIVSSTST SIDAIVPHGL GLGLPCGGES SSGLKELMMG NSSVFGPKQT 
400
TLDFLGLGRA VGNGNGPSNG LSTLVGGGTG IDMATTFGSG EFSGKDISRR 
450
KS
500