fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G51910 AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1)

>AT3G51910.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaJI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, Hpy99I, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, MwoI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tsp45I, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AluI AG|CT 402, 473, 484, 612
ApoI Pu|AATTPy 295
BfaI C|TAG 546
BslI CCNNNNN|NNGG 57
BsrDI GCAATGNN| 555
BsrI ACTGGN| 741
BssKI |CCNGG 17
BstF5I GGATGNN| 115, 763
Cac8I GCN|NGC 394
DdeI C|TNAG 447, 786
DpnI GA-CH3|TC 29, 116, 731
DpnII |GATC 29, 116, 731
Fnu4HI GC|NGC 25, 455
HinfI G|ANTC 197, 443, 560, 627
HpaII C|CGG 17
Hpy188I TCN|GA 89, 244, 268, 663
HpyCH4III ACN|GT 329
HpyCH4V TG|CA 180, 298, 395, 555, 573, 690
MboI |GATC 29, 116, 731
MseI T|TAA 606
MslI CAPyNN|NNPuTG 71
MspI C|CGG 17
N.BstNBI GAGTCNNNN|N 448, 565, 632
NciI CC|[CG]GG 17
NlaIII CATG| 386, 698
Sau3AI |GATC 29, 116, 731
ScrFI CC|NGG 17
SmlI C|TPyPuAG 234, 616
Taqƒ¿I T|CGA 656
TfiI G|A[AT]TC 197
TseI G|C[AT]GC 25, 455
Tsp509I |AATT 227, 294, 604, 666
TspRI NNCA[CG]TGNN| 127


Click here to view TAIR data

>AT3G51910.1 length:819
ATGATGAACC CGTTTCTCCC GGAAGGCTGC GATCCACCAC CACCACCACA 
50
ACCAATGGAG GGTTTACACG AAAATGCTCC ACCTCCATTT CTGACCAAGA 
100
CATTTGAGAT GGTGGATGAT CCAAACACTG ACCACATCGT ATCTTGGAAC 
150
AGAGGAGGAA CAAGTTTTGT CGTCTGGGAT TTGCATTCTT TCTCCACGAT 
200
TCTCCTTCCT CGTCATTTCA AACACAGCAA TTTCTCAAGT TTCATCAGAC 
250
AACTCAATAC TTATGGTTTC AGAAAGATAG AAGCAGAGAG ATGGGAATTT 
300
GCAAACGAAG AGTTTTTGTT AGGACAAAGA CAGTTGTTGA AGAACATCAA 
350
GAGGAGAAAC CCTTTTACTC CATCATCTTC ACCAAGCCAT GACGCTTGCA 
400
ACGAGCTTCG CAGAGAGAAG CAAGTGCTAA TGATGGAGAT AGTGAGTCTA 
450
AGACAGCAGC AACAAACAAC GAAAAGCTAC ATCAAAGCTA TGGAACAGAG 
500
GATAGAAGGA ACAGAGAGGA AACAGAGACA AATGATGTCG TTTCTGGCTA 
550
GAGCAATGCA GAGTCCTTCG TTTTTGCATC AGTTGTTGAA ACAAAGAGAT 
600
AAAAAAATTA AGGAGCTTGA GGATAATGAG TCAGCAAAGA GGAAAAGAGG 
650
TTCTTCTTCG ATGTCGGAAT TGGAAGTTTT GGCTTTGGAG ATGCAAGGGC 
700
ATGGAAAACA GAGGAATATG TTGGAAGAAG AGGATCATCA ACTGGTGGTA 
750
GAGAGAGAGT TGGATGATGG TTTCTGGGAA GAGTTGCTTA GTGATGAGAG 
800
TTTGGCTTCC ACCTCCTAA
850

>AT3G51910.1 longest ORF length:272
MMNPFLPEGC DPPPPPQPME GLHENAPPPF LTKTFEMVDD PNTDHIVSWN 
50
RGGTSFVVWD LHSFSTILLP RHFKHSNFSS FIRQLNTYGF RKIEAERWEF 
100
ANEEFLLGQR QLLKNIKRRN PFTPSSSPSH DACNELRREK QVLMMEIVSL 
150
RQQQQTTKSY IKAMEQRIEG TERKQRQMMS FLARAMQSPS FLHQLLKQRD 
200
KKIKELEDNE SAKRKRGSSS MSELEVLALE MQGHGKQRNM LEEEDHQLVV 
250
ERELDDGFWE ELLSDESLAS TS
300