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| Locus | Common name | Short description |
| AT3G52250 | Duplicated homeodomain-like superfamily protein (.1) |
>AT3G52250.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, NcoI, NotI, PacI, PstI, SalI, SmaI
| Name | Recognition sequence | Cut positions |
| BamHI | G|GATCC | 492, 1734 |
| BglII | A|GATCT | 3283, 3355, 4353, 4483 |
| EcoRI | G|AATTC | 3561, 4736 |
| EcoRV | GAT|ATC | 3156 |
| HindIII | A|AGCTT | 960, 1636, 2347 |
| HpaI | GTT|AAC | 1156 |
| KpnI | GGTAC|C | 2452, 4073 |
| NdeI | CA|TATG | 2133, 3710 |
| NheI | G|CTAGC | 2268, 2637 |
| PvuII | CAG|CTG | 1919 |
| SacI | GAGCT|C | 34, 1435, 1778, 2419, 3096 |
| SpeI | A|CTAGT | 220, 4438 |
| StyI | C|C[AT][AT]GG | 1709, 1805, 2599 |
| XbaI | T|CTAGA | 388, 1090, 3100 |
| XhoI | C|TCGAG | 128 |
Click here to view TAIR data
>AT3G52250.1 length:4971
ATGCCGCAGG ATCACGCTTC GTGGGATCGG AAAGAGCTCT TGAGGCAAAG | 50 |
GAAACACGAT AGGCCTGAAC AATCTTTTGA ATCCCCGCCT TTTCGATGGA | 100 |
GGGATTCGCC TTCTTCTCAC CATGTTCCTC GAGAGTTTTC TTCTCGTTTG | 150 |
GGATCTGGAG ACTTCCGCAG ACCTTCTTGT CATGGTAAGC AGGGTGGACG | 200 |
GCACCAGTTT GTGGAGGAGA CTAGTCATGG ATACACATCT TCTCGGTCCA | 250 |
GTGCCCGAAT GTTTGATAAT TATAGGCCAT CAGCATCGCG TGGAGACTGG | 300 |
AGATATACCA GGAATTGCAG GGATGATAGA GTTTCTGTAA GCCAAAAGGA | 350 |
ATGGAAATGC AATACATGGG AGATGAGCAA CGGATCTTCT AGAAGTTTTG | 400 |
AGAGGCCATT TGGTATTAGA AATGGTCGGA GGTCAGTTGA TGAAAGGCCG | 450 |
CTACATGCTT CAGATACTCA TTCTACCGTG GTGAACTCTT TGGATCCAGC | 500 |
CAACTCGGCT CATTATCTGG ACAATGAGAT CAGTACCCCA GTACGGTCTC | 550 |
TTAAAATTAA AAATGAGCAT AAATTTTCAG ATCAAAGGTT ATCACTTCCT | 600 |
TCAGATCCTC ATTCTGAATG TATTAGCTTG TTTGAACGGC CTTCTTCTGA | 650 |
GAACAATTAT GGCAATAAGG TTTGTTCACC AGCAAAGCAA TGCAATGATT | 700 |
TGATGTATGG TCGAAGGTTA GTTAGTGATA ATTCATTAGA TGCTCCAATC | 750 |
CCCAATGCAG AGCTGGAGGG GACTTGGGAA CAACTTCGCC TGAAAGACCC | 800 |
GCAAGATAAC AATAGTTTAC ATGGTATCAA TGATATAGAC GGTGATAGGA | 850 |
AATGTGCAAA GGAGAGTTCT CTGGGAGCAA CTGGGAAACT TCCACTGTGG | 900 |
AATAGTTCTG GGAGTTTTGC ATCTCAGAGT TCAGGTTTTA GTCATTCAAG | 950 |
TAGCTTGAAA AGCTTGGGGG CTGTTGATTC CAGCGATCGG AAGATTGAGG | 1000 |
TTCTTCCTAA AATTGTTACT GTGACTCAAT CTTCTTCAGG AGACGCTACT | 1050 |
GCCTGTGCCA CAACTACTCA TCTTTCTGAG GAGATGAGTT CTAGAAAGAA | 1100 |
ACAACGTCTC GGGTGGGGTG AGGGACTGGC GAAATATGAG AAAAAGAAAG | 1150 |
TTGATGTTAA CCCAAATGAA GATGGAACAA CATTGATGGA AAACGGTTTA | 1200 |
GAGGAACTAC ATTCGTTAAA CAAAAATATT GCTGATAAAA GTCCCACAGC | 1250 |
AGCCATTGTT CCAGATTATG GTTCCCCTAC AACACCATCC TCTGTAGCTT | 1300 |
GCAGTTCATC ACCAGGGTTT GCTGATAAAT CATCTCCGAA GGCTGCTATA | 1350 |
GCTGCTAGTG ATGTCAGTAA CATGTGCCGT TCGCCTAGTC CCGTGTCTAG | 1400 |
TATTCACCTT GAACGATTCC CAATCAATAT CGAGGAGCTC GATAACATCT | 1450 |
CAATGGAGCG TTTTGGCTGT TTACTCAATG AGTTACTTGG TACTGATGAT | 1500 |
TCTGGTACAG GGGATTCCAG TTCTGTCCAA TTGACATCAA TGAACACATT | 1550 |
ACTTGCCTGG AAAGGTGAAA TTTTGAAAGC TGTGGAGATG ACTGAATCAG | 1600 |
AAATTGATCT CCTTGAAAAC AAACATAGGA CACTAAAGCT TGAAGGTAGA | 1650 |
AGACACTCTC GTGTTGTTGG ACCCAGTTCA TACTGTTGTG ATGGAGATGC | 1700 |
AAATGTGCCC AAGGAGCAGG CTTCTTGTAG TTTGGATCCT AAGGCAACAG | 1750 |
CTTCTTCTGT AGCTAAAACA CTGGTGAGAG CTCCTGTGCA TCAGGCTGGT | 1800 |
TTAGCCAAGG TTCCTGCTGA TGTTTTTGAA GATAGTCCTG GGGAAGTTAA | 1850 |
ACCTCTATCC CAATCTTTTG CCACTGTTGA AAGAGAGGAA GATATACTGC | 1900 |
CCATACCATC TATGAAGGCA GCTGTTTCTT CGAAAGAGAT TAACACACCT | 1950 |
GCTTTTGCCA ATCAGGAAAC TATTGAGGTT TCTTCTGCTG ATGACAGCAT | 2000 |
GGCCTCCAAA GAAGACTTGT TCTGGGCTAA GTTATTATCT GCCAATAAGA | 2050 |
AATATGCTTG TGAATCATCT GGAGTATTCA ATCAATTGCT TCCAAGAGAT | 2100 |
TTTAATTCGT CTGACAACTC AAGATTCCCT GGCATATGTC AAACGCAGTT | 2150 |
TGATTCTCAT GTCCAAGAAA AAATTGCAGA TAGGGTAGGC CTATTGAGAG | 2200 |
CTAGGGAGAA AATTTTACTC CTTCAGTTTA AAGCGTTTCA GCTCTCATGG | 2250 |
AAGAAAGATT TGGATCAGCT AGCTTTAGCA AAGTACCAAT CAAAGTCTAG | 2300 |
CAAAAAAACA GAACTATATC CGAATGCAAA AAATGGAGGG TATCTGAAGC | 2350 |
TTCCCCAATC TGTACGCCTG AGGTTCTCTT CTTCAGCTCC AAGAAGGGAT | 2400 |
AGTGTAGTCC CCACAACAGA GCTCGTAAGT TATATGGAAA AGCTACTTCC | 2450 |
GGGTACCCAT CTAAAGCCTT TTAGAGACAT TTTGAAAATG CCTGCTATGA | 2500 |
TTTTGGATGA GAAAGAGAGG GTGATGTCGA GGTTTATTTC TAGCAATGGA | 2550 |
CTGATTGAAG ATCCATGTGA CGTTGAGAAG GAAAGAACAA TGATTAATCC | 2600 |
TTGGACCTCA GAGGAGAAAG AAATCTTTCT GAATTTGCTA GCAATGCATG | 2650 |
GGAAGGATTT CAAGAAGATT GCTTCATCTC TTACCCAAAA GACAACTGCG | 2700 |
GACTGTATTG ATTACTACTA CAAAAACCAC AAGTCTGATT GTTTTGGGAA | 2750 |
AATAAAGAAG CAGCGTGCTT ATGGTAAGGA AGGGAAGCAC ACCTACATGT | 2800 |
TGGCTCCACG AAAAAAGTGG AAACGTGAGA TGGGGGCTGC CTCTCTTGAT | 2850 |
ATTTTAGGGG ATGTCTCCAT TATAGCAGCA AACGCTGGAA AGGTTGCATC | 2900 |
AACCAGGCCG ATCTCTTCCA AAAAGATCAC CCTTAGAGGT TGCAGCAGTG | 2950 |
CTAATTCATT GCAGCACGAT GGAAATAACT CTGAAGGGTG CTCCTACAGT | 3000 |
TTTGATTTCC CACGTAAGAG AACTGCTGGT GCAGATGTTT TAGCTGTTGG | 3050 |
TCCTTTGTCA CCAGAGCAGA TAAATTCTTG CTTAAGGACT TCTGTGAGCT | 3100 |
CTAGAGAGAG GTGTATGGAT CATCTGAAGT TTAATCATGT CGTAAAGAAA | 3150 |
CCTCGGATAT CTCATACTCT ACATAATGAG AACAGCAATA CTCTACACAA | 3200 |
TGAGAACAGC AACGAAGAAG ATGACTCATG TTCGGAAGAG AGCTGTGGGG | 3250 |
AAACAGGTCC TATTCACTGG ACAGATGATG AGAGATCTGC CTTTATACAG | 3300 |
GGTTTTTCGC TTTTTGGCAA GAATTTTGCT TCAATATCAA GGTACGTCGG | 3350 |
GACAAGATCT CCAGATCAGT GTAAGGTTTT CTTCAGCAAA GTTCGGAAAT | 3400 |
GTCTTGGGTT GGAATCTATA AAGTTTGGAT CTGGAAATGT AAGCACATCC | 3450 |
GTAAGTGTTG ATAATGGCAA TGAGGGTGGT GGGAGCGACT TGGAAGATCC | 3500 |
TTGTCCTATG GAGAGTAACT CTGGCATAGT GAATAATGGA GTTTGTGCCA | 3550 |
AGATGGGTAT GAATTCTCCT ACCTCACCTT TTAATATGAA TCAGGATGGT | 3600 |
GTTAATCAAT CAGGCTCTGC AAATGTGAAA GCCGACCTTA GTAGATCAGA | 3650 |
AGAAGAGAAT GGGCAGAAAT ATTTGTGTCT GAAAGATGAT AATAATCTCG | 3700 |
TGAACAATGC ATATGTCAAT GGCGGTTTCC CGAGTCTAGT TTCAGAATCT | 3750 |
TGTAGAGATT TGGTAGATAT TAATACTGTT GAGAGCCAGT CTCAGGCTGC | 3800 |
CGGAAAAAGC AAGAGCAATG ATCTCATGTC AATGGAAATC GATGAAGGTG | 3850 |
TCTTAACATC TGTCACTATA TCTTCCGAGC CATTGTATTG TGGCCTAAGT | 3900 |
GTTCTTTCCA ATGTTATTGT GGAAACCCCT ACAGAAATCT CACGAAAGGG | 3950 |
CTCAGGAGAT CAAGGTGCTA CAATGCCTAA ATTTAGTTCA AAGAATCAAG | 4000 |
ATGGAGTGAT GCAAGCTGCA AACAGAACCA GAAATTCTGG CCTTGAACCT | 4050 |
GAAAGTGCAC CTTCAGGTTT CAGGTACCCT GAGTGTCTTC ACCATGTTCC | 4100 |
GATTGAGGTG TGTACGGAAA ACCCTATAGG CGTCAGTGCA CCACGAGGAA | 4150 |
ATCCAAATTG CCATGCAGAG TCCGAGTCAG GAAATTCTCT TGTTGGACAA | 4200 |
GTTGACGAAA CACATGACTT GGGTTGGCCC AAGAACAATC TGGAATTGGA | 4250 |
TGGGAGGCTT CAGGTTTTAG GCCATGTAAA CCCTGAGCAG ATTGGTCTAC | 4300 |
TAAAAGCGAC CAATACAGAA TCTTGTCAAA ATCCCCAGAG ATCAGTCACC | 4350 |
CAAGATCTGA GCAGGATAAG TAGATCAAAA TCTGATTTGA TCGTAAAAAC | 4400 |
CCAACGTACA GGTGAAGGCT TCTCACTCAC CAAGTGTACT AGTTCAGCTC | 4450 |
CTAAGCCTCT GGCAGTATCC CATAAAGAGG GCAGATCTGG TCATAGCAGG | 4500 |
AGCCATTCGT TTAGTTTGTC TGATACTGAG AGACTCCACA AGAATGGAGA | 4550 |
TGTGAAACTG TTTGGTACAG TACTTACTAC TGATGAGAAT GGAATAAAAC | 4600 |
AAAAACACAA TCCATGTGGA ATTGTCAGGT CATCATCAAC CTTGAGCAGG | 4650 |
GACCATGATA CAAGACATCA TTACATTAAT CAGCAACACC TTCAGAACGT | 4700 |
TCCCATTACG AGCTACGGTT TTTGGGATGG CAACAGAATT CAAACCGGGC | 4750 |
TCACATCTTT GCCAGAGTCG GCCAAGTTGC TTGCAAGTTG CCCTGAAGCA | 4800 |
TTTTCCACGC ATCTAAAGCA GCAAGTTGGT AACAGCAAAG AGATTCTGGT | 4850 |
GGATGTTAAT GGTGGAATTT TGAGCTTTGG TAAGCATAAC GAAGATAGAG | 4900 |
CTGAGTCCTC AAGCGCTAAG GATGAAGGTA ACATAGGAGG GGTAAATGGT | 4950 |
GTAGCAGAGG CAGCCACGTG A | 5000 |
>AT3G52250.1 longest ORF length:1656
MPQDHASWDR KELLRQRKHD RPEQSFESPP FRWRDSPSSH HVPREFSSRL | 50 |
GSGDFRRPSC HGKQGGRHQF VEETSHGYTS SRSSARMFDN YRPSASRGDW | 100 |
RYTRNCRDDR VSVSQKEWKC NTWEMSNGSS RSFERPFGIR NGRRSVDERP | 150 |
LHASDTHSTV VNSLDPANSA HYLDNEISTP VRSLKIKNEH KFSDQRLSLP | 200 |
SDPHSECISL FERPSSENNY GNKVCSPAKQ CNDLMYGRRL VSDNSLDAPI | 250 |
PNAELEGTWE QLRLKDPQDN NSLHGINDID GDRKCAKESS LGATGKLPLW | 300 |
NSSGSFASQS SGFSHSSSLK SLGAVDSSDR KIEVLPKIVT VTQSSSGDAT | 350 |
ACATTTHLSE EMSSRKKQRL GWGEGLAKYE KKKVDVNPNE DGTTLMENGL | 400 |
EELHSLNKNI ADKSPTAAIV PDYGSPTTPS SVACSSSPGF ADKSSPKAAI | 450 |
AASDVSNMCR SPSPVSSIHL ERFPINIEEL DNISMERFGC LLNELLGTDD | 500 |
SGTGDSSSVQ LTSMNTLLAW KGEILKAVEM TESEIDLLEN KHRTLKLEGR | 550 |
RHSRVVGPSS YCCDGDANVP KEQASCSLDP KATASSVAKT LVRAPVHQAG | 600 |
LAKVPADVFE DSPGEVKPLS QSFATVEREE DILPIPSMKA AVSSKEINTP | 650 |
AFANQETIEV SSADDSMASK EDLFWAKLLS ANKKYACESS GVFNQLLPRD | 700 |
FNSSDNSRFP GICQTQFDSH VQEKIADRVG LLRAREKILL LQFKAFQLSW | 750 |
KKDLDQLALA KYQSKSSKKT ELYPNAKNGG YLKLPQSVRL RFSSSAPRRD | 800 |
SVVPTTELVS YMEKLLPGTH LKPFRDILKM PAMILDEKER VMSRFISSNG | 850 |
LIEDPCDVEK ERTMINPWTS EEKEIFLNLL AMHGKDFKKI ASSLTQKTTA | 900 |
DCIDYYYKNH KSDCFGKIKK QRAYGKEGKH TYMLAPRKKW KREMGAASLD | 950 |
ILGDVSIIAA NAGKVASTRP ISSKKITLRG CSSANSLQHD GNNSEGCSYS | 1000 |
FDFPRKRTAG ADVLAVGPLS PEQINSCLRT SVSSRERCMD HLKFNHVVKK | 1050 |
PRISHTLHNE NSNTLHNENS NEEDDSCSEE SCGETGPIHW TDDERSAFIQ | 1100 |
GFSLFGKNFA SISRYVGTRS PDQCKVFFSK VRKCLGLESI KFGSGNVSTS | 1150 |
VSVDNGNEGG GSDLEDPCPM ESNSGIVNNG VCAKMGMNSP TSPFNMNQDG | 1200 |
VNQSGSANVK ADLSRSEEEN GQKYLCLKDD NNLVNNAYVN GGFPSLVSES | 1250 |
CRDLVDINTV ESQSQAAGKS KSNDLMSMEI DEGVLTSVTI SSEPLYCGLS | 1300 |
VLSNVIVETP TEISRKGSGD QGATMPKFSS KNQDGVMQAA NRTRNSGLEP | 1350 |
ESAPSGFRYP ECLHHVPIEV CTENPIGVSA PRGNPNCHAE SESGNSLVGQ | 1400 |
VDETHDLGWP KNNLELDGRL QVLGHVNPEQ IGLLKATNTE SCQNPQRSVT | 1450 |
QDLSRISRSK SDLIVKTQRT GEGFSLTKCT SSAPKPLAVS HKEGRSGHSR | 1500 |
SHSFSLSDTE RLHKNGDVKL FGTVLTTDEN GIKQKHNPCG IVRSSSTLSR | 1550 |
DHDTRHHYIN QQHLQNVPIT SYGFWDGNRI QTGLTSLPES AKLLASCPEA | 1600 |
FSTHLKQQVG NSKEILVDVN GGILSFGKHN EDRAESSSAK DEGNIGGVNG | 1650 |
VAEAAT | 1700 |