fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G52440 AtDof3,5 Dof-type zinc finger DNA-binding family protein (.1)

>AT3G52440.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 91
NcoI C|CATGG 434
StyI C|C[AT][AT]GG 434


Click here to view TAIR data

>AT3G52440.1 length:744
ATGGAGAGAG CAGAGGCCTT GACATCATCG TTTATATGGC GGCCAAACGC 
50
AAACGCAAAC GCGGAGATCA CGCCGAGTTG TCCAAGATGT GGATCCTCTA 
100
ACACAAAGTT CTGTTACTAC AACAACTATA GCCTCACTCA GCCTCGCTAC 
150
TTCTGCAAAG GCTGCCGCAG ATATTGGACC AAAGGTGGTT CCCTCCGCAA 
200
TGTTCCTGTA GGCGGTGGCT GTCGAAAATC CCGCCGCCCC AAATCATCTT 
250
CTGGTAACAA TACTAAAACT AGCCTAACCG CTAATTCTGG CAACCCCGGT 
300
GGTGGTTCAC CAAGCATCGA TCTTGCTCTT GTTTACGCCA ATTTCTTGAA 
350
TCCAAAGCCT GACGAATCTA TACTACAAGA AAATTGCGAC TTAGCCACTA 
400
CGGATTTTTT GGTAGATAAT CCTACCGGCA CTTCCATGGA CCCTTCATGG 
450
AGTATGGACA TCAATGATGG TCATCATGAT CATTATATTA ATCCGGTGGA 
500
ACACATTGTG GAGGAATGTG GTTATAATGG CTTGCCTCCA TTTCCTGGTG 
550
AAGAGCTTCT CTCTTTAGAC ACTAATGGTG TTTGGTCTGA TGCTTTGTTG 
600
ATTGGTCATA ACCATGTAGA CGTTGGCGTG ACTCCGGTTC AGGCTGTACA 
650
CGAACCGGTG GTTCATTTCG CTGACGAATC CAATGATTCC ACCAATCTCT 
700
TGTTTGGAAG TTGGAGCCCT TTTGATTTCA CTGCCGATGG ATGA
750

>AT3G52440.1 longest ORF length:247
MERAEALTSS FIWRPNANAN AEITPSCPRC GSSNTKFCYY NNYSLTQPRY 
50
FCKGCRRYWT KGGSLRNVPV GGGCRKSRRP KSSSGNNTKT SLTANSGNPG 
100
GGSPSIDLAL VYANFLNPKP DESILQENCD LATTDFLVDN PTGTSMDPSW 
150
SMDINDGHHD HYINPVEHIV EECGYNGLPP FPGEELLSLD TNGVWSDALL 
200
IGHNHVDVGV TPVQAVHEPV VHFADESNDS TNLLFGSWSP FDFTADG
250