fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G53200 ATMYB27 myb domain protein 27 (.1)

>AT3G53200.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 567
HindIII A|AGCTT 519
NcoI C|CATGG 37
PstI CTGCA|G 630
StyI C|C[AT][AT]GG 37


Click here to view TAIR data

>AT3G53200.1 length:717
ATGGATTTTA AGAAGGAAGA AACACTTCGT AGAGGGCCAT GGCTCGAAGA 
50
AGAAGACGAA CGGCTAGTGA AGGTCATTAG TCTTTTGGGA GAACGTCGTT 
100
GGGATTCTTT AGCAATAGTT TCCGGTTTGA AGAGGAGTGG TAAGAGTTGC 
150
AGGCTAAGGT GGATGAACTA TCTGAATCCG ACTCTGAAGC GTGGACCGAT 
200
GAGTCAAGAA GAAGAGAGAA TCATCTTTCA GCTCCATGCT CTATGGGGTA 
250
ACAAGTGGTC GAAGATTGCG AGAAGATTAC CCGGTAGGAC TGATAACGAG 
300
ATAAAGAACT ATTGGAGAAC TCATTATAGA AAGAAACAGG AAGCTCAAAA 
350
CTATGGAAAG CTCTTTGAGT GGAGAGGAAA TACAGGAGAA GAATTGTTGC 
400
ACAAGTATAA GGAAACAGAG ATCACTAGGA CAAAGACGAC GTCTCAAGAA 
450
CATGGTTTTG TTGAAGTTGT GAGCATGGAA AGTGGTAAAG AAGCCAACGG 
500
TGGTGTTGGT GGAAGAGAAA GCTTCGGTGT TATGAAATCA CCGTATGAAA 
550
ATCGGATTTC GGATTGGATA TCAGAGATTT CTACTGACCA GAGTGAAGCA 
600
AATCTTTCAG AAGATCACAG CAGCAATAGC TGCAGTGAGA ACAATATTAA 
650
CATTGGTACT TGGTGGTTTC AAGAGACTAG GGACTTTGAG GAGTTTTCAT 
700
GTTCTCTATG GTCATAA
750

>AT3G53200.1 longest ORF length:238
MDFKKEETLR RGPWLEEEDE RLVKVISLLG ERRWDSLAIV SGLKRSGKSC 
50
RLRWMNYLNP TLKRGPMSQE EERIIFQLHA LWGNKWSKIA RRLPGRTDNE 
100
IKNYWRTHYR KKQEAQNYGK LFEWRGNTGE ELLHKYKETE ITRTKTTSQE 
150
HGFVEVVSME SGKEANGGVG GRESFGVMKS PYENRISDWI SEISTDQSEA 
200
NLSEDHSSNS CSENNINIGT WWFQETRDFE EFSCSLWS
250