fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G53600 C2H2-type zinc finger family protein (.1)

>AT3G53600.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 431
NheI G|CTAGC 205


Click here to view TAIR data

>AT3G53600.1 length:528
ATGAAGAGAG ACCGGTCCGA TTACGAAGAA TCCATGAAGC ATATAGACAT 
50
AGTAGAAAGT CTAATGATGT TATCTCGAAG TTTCGTGGTC AAACAAATCG 
100
ATGTAAAGCA ATCTACCGGA AGCAAAACGA ACCATAATAA CCACTTCGAA 
150
TGCAAAACGT GTAACCGGAA ATTTGATTCC TTCCAAGCTC TTGGAGGTCA 
200
TAGAGCTAGC CACAAGAAAC CTAAGCTGAT CGTTGACCAA GAACAGGTGA 
250
AGCATCGTAA CAAAGAGAAT GATATGCATA AGTGTACAAT TTGCGATCAA 
300
ATGTTTGGGA CCGGTCAAGC TCTAGGCGGT CACATGAGAA AGCATAGGAC 
350
GAGCATGATA ACCGAGCAAT CGATTGTCCC TTCTGTGGTT TATTCCAGAC 
400
CGGTTTTTAA TCGTTGCAGT AGCAGCAAGG AGATCTTGGA CTTAAATCTA 
450
ACTCCATTGG AAAATGATCT TGTGTTAATC TTTGGGAAGA ATTTGGTTCC 
500
ACAAATTGAT TTGAAGTTTG TGAATTAG
550

>AT3G53600.1 longest ORF length:175
MKRDRSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SKTNHNNHFE 
50
CKTCNRKFDS FQALGGHRAS HKKPKLIVDQ EQVKHRNKEN DMHKCTICDQ 
100
MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL 
150
TPLENDLVLI FGKNLVPQID LKFVN
200