fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G53790 TRFL4 TRF-like 4 (.1)

>AT3G53790.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 707
EcoRV GAT|ATC 1107
HindIII A|AGCTT 971
HpaI GTT|AAC 798
StyI C|C[AT][AT]GG 43, 843


Click here to view TAIR data

>AT3G53790.1 length:1203
ATGGTGGACT GTGGTGTCGA TATTTACCAA CTTCCTGTTG TTCCTAGGGC 
50
ATGTAGATCA CCCAGAGGAC GCAGGCTAAA AATTATGAGA AAACAAAGAT 
100
CGGAGTTCGA GGTTTTAGCC CAAGTGGCTG GAAGATTCTC AGGTGAGCGT 
150
AAAAACCGAA TTGTTATCGG CTCGTTGGCT CACGAAACAA AGGAGACGAA 
200
GGACGATAAT GTCGTCGTCA ATAACTTCTT GGAGACAATG GAAGTTGAGG 
250
TTAAGCCGCA ACCTGGTCTG GAGAACCTTT CTCAGGTGTT ATTGTCTAAG 
300
GACTGGTTAG CTCTTGGCCC TTCCATGCCT AACTCGCCAA TCACACAAGA 
350
AGAAAACTTT GATTCACGTT CCAAGATCGA TAGTAAAAGA AAGGTGAGTC 
400
ACTTAAAAGA GCGAGGTTCG TGTATTAGCC AAGAATCGCA GAATATGTAT 
450
CCTTTGAAGA AACGAAAGCT GTTTTACCAA AATCATTCAT CTGAATCACA 
500
TGATACTCCA TGTACCGTGA AATTCGGTAT TAAGTCGTTG AATATCTCGG 
550
AGCTATTGGT AGACGTTCCC GAATCAGCCA CGGTTGGCTC ACTGAAACTA 
600
GCGGTATTGG AGGCGGTAAC GCAGATTCTC AAGGGTGGAT TAAACATTGG 
650
AGTGCTCTTT CAAGGTAAAA CCATCGTTGA TGACTCCAAA ACGCTTCTTC 
700
AGATTGGGAT CCCATACGAT GATGACGATG ACGAAAACCT CGGTTCTTTG 
750
GGATTCATGC TAGAACCGCA AAAATCAGAA ACAACAACAA TAACAACGTT 
800
AACCACTGTT TCCCCGAGAA CACGACTTAG ACAAAATCAG GTCCTAGGGT 
850
CCGTGGATAG CACTGAGGCA GTAGCAGCTA AATCCGTGGT TCCAGTACGT 
900
ATGAAACCGG CCTGGCAGCC AGAGATGGTT CAACGGAGAA TAAGACGGCC 
950
ATTCACTGTC TCAGAAGTAG AAGCTTTGGT TCAGGCCGTA GAGAGGCTCG 
1000
GCACCGGAAG GTGGCGCGAC GTGAAGTCTC ATGCATTTAA CCATGTAAAT 
1050
CATCGTACCT ACGTTGACCT CAAGGATAAA TGGAAAACGT TGGTTCACAC 
1100
GGCAAAGATA TCAGCAAGGC AAAGGAGAGG CGAACCTGTG CCTCAAGACC 
1150
TTCTTGATAG GGTTTTAGCT GCTCATGCTT TCTGGTCTGA CCGGACCGGA 
1200
TGA
1250

>AT3G53790.1 longest ORF length:400
MVDCGVDIYQ LPVVPRACRS PRGRRLKIMR KQRSEFEVLA QVAGRFSGER 
50
KNRIVIGSLA HETKETKDDN VVVNNFLETM EVEVKPQPGL ENLSQVLLSK 
100
DWLALGPSMP NSPITQEENF DSRSKIDSKR KVSHLKERGS CISQESQNMY 
150
PLKKRKLFYQ NHSSESHDTP CTVKFGIKSL NISELLVDVP ESATVGSLKL 
200
AVLEAVTQIL KGGLNIGVLF QGKTIVDDSK TLLQIGIPYD DDDDENLGSL 
250
GFMLEPQKSE TTTITTLTTV SPRTRLRQNQ VLGSVDSTEA VAAKSVVPVR 
300
MKPAWQPEMV QRRIRRPFTV SEVEALVQAV ERLGTGRWRD VKSHAFNHVN 
350
HRTYVDLKDK WKTLVHTAKI SARQRRGEPV PQDLLDRVLA AHAFWSDRTG 
400