fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G53820 C2H2 and C2HC zinc fingers superfamily protein (.1)

>AT3G53820.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 369
HindIII A|AGCTT 101
NdeI CA|TATG 63
SacI GAGCT|C 376


Click here to view TAIR data

>AT3G53820.1 length:429
ATGAATAGAA AATACTTGGA TCGTCGATCA TATTCATGGT CCGGATCACA 
50
AGCAAGACCA TACATATGCG AATTTTGCGA GAGAGGTTTT TCCAACGCAC 
100
AAGCTTTAGG AGGGCACATG AACATCCACA GAAAAGACAG GGCAAAACTT 
150
CGACAAGCGA ACCTAAAAGA AGAAGACAGT GAAGATGCCA TTTGCACCAC 
200
TTCGAGAAAT CGGTTTGGGC AAGAGCTTAT TGAGTTACCT TTCTTCGTTG 
250
ATACGGTCGG TCCAAGAAGA AAAGGAGAAG ATGATAAAAG CGAAAAAGGT 
300
TTAGGAGATG AAGAAAAGAA AAATATGAGG ATACTTCAAA AGGCTTTATC 
350
TCAAAGTGCA GACGTGATAG ATCTTGAGCT CCGTCTAGGA TTAGATCCTT 
400
ATAAAAAAAC AACAAGTACA AGTACGTAA
450

>AT3G53820.1 longest ORF length:142
MNRKYLDRRS YSWSGSQARP YICEFCERGF SNAQALGGHM NIHRKDRAKL 
50
RQANLKEEDS EDAICTTSRN RFGQELIELP FFVDTVGPRR KGEDDKSEKG 
100
LGDEEKKNMR ILQKALSQSA DVIDLELRLG LDPYKKTTST ST
150