fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G54320 ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)

>AT3G54320.2 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AclI, AfeI, AflII, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspHI, BspMI, BsrBI, BsrDI, BsrGI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, ClaI, DdeI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NcoI, NgoMIV, NheI, NotI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PsiI, PspGI, PspOMI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SpeI, SphI, StuI, StyI, SwaI, TliI, Tth111I, XbaI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 281, 433, 829
AccIII(BspMII) T|CCGGA 855
AciI C|CGC 238, 620
AgeI A|CCGGT 470
AluI AG|CT 36, 385, 511, 765, 858
ApoI Pu|AATTPy 46, 162
AvaII G|G[AT]CC 144
BanI G|GPyPuCC 364
BanII GPuGCPy|C 969
BclI T|GATCA 819
BfaI C|TAG 291, 582
BsaAI PyAC|GTPu 114, 607
BsaBI GATNN|NNATC 824
BsaHI GPu|CGPyC 268, 286
BsaJI C|CNNGG 360, 1043
BsaWI [AT]|CCGG[AT] 470, 855
BsiWI C|GTACG 116
BslI CCNNNNN|NNGG 524
Bsp1286I G[GAT]GC[CAT]|C 969
BspEI T|CCGGA 855
BspT107I(HgiCI) G|G[TC][AG]CC 364
BsrFI Pu|CCGGPy 470
BsrI ACTGGN| 5, 140
BstUI CG|CG 281, 433, 829
BstXI CCANNNNN|NTGG 252
BtsI GCAGTGNN| 253, 702
Cac8I GCN|NGC 768
Cfr10I [AG]|CCGG[TC] 470
DpnI GA-CH3|TC 119, 325, 743, 818
DpnII |GATC 119, 325, 743, 818
EcoO109I PuG|GNCCPy 145
EcoRI G|AATTC 46
Fnu4HI GC|NGC 102, 126, 241, 283, 387, 393, 408, 696, 712
HhaI GCG|C 426
HinP1I G|CGC 426
HinfI G|ANTC 11, 51, 720, 824, 839, 1011
HpaII C|CGG 167, 469, 854
Hpy188I TCN|GA 54, 323, 328, 687, 821, 1066
Hpy99I CG[AT]CG| 287
HpyCH4III ACN|GT 91, 602
HpyCH4IV A|CGT 113, 176, 606
HpyCH4V TG|CA 201, 391, 713
MboI |GATC 119, 325, 743, 818
MfeI C|AATTG 708
MseI T|TAA 473
MspI C|CGG 167, 469, 854
MwoI GCNNNNN|NNGC 247, 393
NdeI CA|TATG 86, 398
NlaIII CATG| 403, 898
NlaIV GGN|NCC 144, 364
NruI TCG|CGA 830
PpuMI PuG|G[AT]CCPy 145
PstI CTGCA|G 392
RsaI GT|AC 115, 136, 178, 349, 355, 604
Sau3AI |GATC 119, 325, 743, 818
Sau96I G|GNCC 144
ScaI AGT|ACT 137, 350
SfcI C|TPuPyAG 392
SmlI C|TPyPuAG 133
SnaBI TAC|GTA 114
SspI AAT|ATT 224
Taqƒ¿I T|CGA 13, 48, 79, 421, 447, 891, 903
TfiI G|A[AT]TC 11, 51, 824, 839
TseI G|C[AT]GC 102, 126, 387, 393, 408, 696, 712
Tsp45I |GT[CG]AC 210
Tsp509I |AATT 45, 161, 189, 443, 458, 707
TspRI NNCA[CG]TGNN| 94, 253, 702
XcmI CCANNNNN|NNNNTGG 740


Click here to view TAIR data

>AT3G54320.2 length:1071
ATGGACTGGG AGATTCGAGG CTCATCTTTG GGACAAAAGC TCTTGGAATT 
50
CGATTCAGAA CAAGAAAGGC AAACAAGGTT TCGAGCATAT GACAGTGAAG 
100
AAGCAGCAGC ACATACGTAC GATCTGGCTG CTCTCAAGTA CTGGGGACCC 
150
GACACCATCT TGAATTTTCC GGCAGAGACG TACACAAAGG AATTGGAAGA 
200
AATGCAGAGA GTGACAAAGG AAGAATATTT GGCTTCTCTC CGCCGCCAGA 
250
GCAGTGGTTT CTCCAGAGGC GTCTCTAAAT ATCGCGGCGT CGCTAGGCAT 
300
CACCACAACG GAAGATGGGA GGCTCGGATC GGAAGAGTGT TTGGGAACAA 
350
GTACTTGTAC CTCGGCACCT ATAATACGCA GGAGGAAGCT GCTGCAGCAT 
400
ATGACATGGC TGCGATTGAG TATCGAGGCG CAAACGCGGT TACTAATTTC 
450
GACATTAGTA ATTACATTGA CCGGTTAAAG AAGAAAGGTG TTTTCCCGTT 
500
CCCTGTGAAC CAAGCTAACC ATCAAGAGGG TATTCTTGTT GAAGCCAAAC 
550
AAGAAGTTGA AACGAGAGAA GCGAAGGAAG AGCCTAGAGA AGAAGTGAAA 
600
CAACAGTACG TGGAAGAACC ACCGCAAGAA GAAGAAGAGA AGGAAGAAGA 
650
GAAAGCAGAG CAACAAGAAG CAGAGATTGT AGGATATTCA GAAGAAGCAG 
700
CAGTGGTCAA TTGCTGCATA GACTCTTCAA CCATAATGGA AATGGATCGT 
750
TGTGGGGACA ACAATGAGCT GGCTTGGAAC TTCTGTATGA TGGATACAGG 
800
GTTTTCTCCG TTTTTGACTG ATCAGAATCT CGCGAATGAG AATCCCATAG 
850
AGTATCCGGA GCTATTCAAT GAGTTAGCAT TTGAGGACAA CATCGACTTC 
900
ATGTTCGATG ATGGGAAGCA CGAGTGCTTG AACTTGGAAA ATCTGGATTG 
950
TTGCGTGGTG GGAAGAGAGA GCCCACCCTC TTCTTCTTCA CCATTGTCTT 
1000
GCTTATCTAC TGACTCTGCT TCATCAACAA CAACAACAAC AACCTCGGTT 
1050
TCTTGTAACT ATTTGGTCTG A
1100

>AT3G54320.2 longest ORF length:356
MDWEIRGSSL GQKLLEFDSE QERQTRFRAY DSEEAAAHTY DLAALKYWGP 
50
DTILNFPAET YTKELEEMQR VTKEEYLASL RRQSSGFSRG VSKYRGVARH 
100
HHNGRWEARI GRVFGNKYLY LGTYNTQEEA AAAYDMAAIE YRGANAVTNF 
150
DISNYIDRLK KKGVFPFPVN QANHQEGILV EAKQEVETRE AKEEPREEVK 
200
QQYVEEPPQE EEEKEEEKAE QQEAEIVGYS EEAAVVNCCI DSSTIMEMDR 
250
CGDNNELAWN FCMMDTGFSP FLTDQNLANE NPIEYPELFN ELAFEDNIDF 
300
MFDDGKHECL NLENLDCCVV GRESPPSSSS PLSCLSTDSA SSTTTTTTSV 
350
SCNYLV
400