Locus |
Common name |
Short description |
AT3G54810 |
GATA8, BME3, BME3-ZF |
GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) |
>AT3G54810.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SalI, SmaI, SpeI, StyI, XbaI
Name |
Recognition sequence |
Cut positions |
EcoRV
| GAT|ATC |
85 |
HindIII
| A|AGCTT |
12, 261 |
PvuII
| CAG|CTG |
812 |
SacI
| GAGCT|C |
214, 348 |
XhoI
| C|TCGAG |
370 |
Click here to view TAIR data
>AT3G54810.1 length:969
ATGATTGGAA CAAGCTTCCC CGAGGATCTT GATTGTGGCA ACTTCTTTGA | 50 |
CAACATGGAT GATCTCATGG ACTTTCCCGG TGGAGATATC GATGTCGGTT | 100 |
TCGGCATAGG TGACTCCGAC TCTTTCCCTA CCATCTGGAC CACTCATCAC | 150 |
GACACGTGGC CTGCCGCTTC TGATCCTCTC TTCTCTTCCA ACACCAACTC | 200 |
TGATTCATCA CCTGAGCTCT ATGTTCCGTT TGAGGACATT GTTAAGGTGG | 250 |
AAAGACCTCC AAGCTTTGTA GAGGAAACAT TGGTTGAGAA GAAGGAAGAT | 300 |
TCGTTTTCGA CAAACACTGA TTCATCATCT TCTCATAGCC AATTCAGGAG | 350 |
CTCAAGTCCA GTGTCGGTTC TCGAGAGCAG CTCCTCCTCG TCTCAAACCA | 400 |
CCAACACAAC CTCCCTTGTT CTCCCTGGAA AGCACGGTCG TCCACGCACA | 450 |
AAACGCCCTC GTCCACCTGT CCAGGATAAA GATAGAGTCA AAGACAATGT | 500 |
GTGCGGTGGT GACTCGCGCC TCATCATTAG AATACCGAAA CAGTTTCTCT | 550 |
CTGATCACAA CAAGATGATC AACAAGAAGA AGAAGAAGAA GGCCAAGATT | 600 |
ACTTCTTCCT CTTCTTCGTC CGGGATTGAT CTTGAAGTCA ATGGAAACAA | 650 |
CGTCGATTCG TATTCTTCAG AGCAATATCC GCTTAGGAAA TGTATGCACT | 700 |
GTGAGGTCAC CAAGACTCCA CAGTGGAGGC TTGGTCCAAT GGGTCCAAAG | 750 |
ACACTTTGCA ATGCGTGCGG TGTACGTTAC AAATCAGGGA GGCTTTTCCC | 800 |
GGAGTACCGT CCAGCTGCTA GTCCAACATT TACTCCAGCT CTTCACTCAA | 850 |
ACTCACACAA GAAAGTGGCT GAAATGAGAA ACAAGAGATG CAGTGATGGT | 900 |
AGCTACATAA CCGAAGAGAA TGATCTGCAA GGGCTGATTC CGAACAATGC | 950 |
CTACATTGGC GTAGACTAA | 1000 |
>AT3G54810.1 longest ORF length:322
MIGTSFPEDL DCGNFFDNMD DLMDFPGGDI DVGFGIGDSD SFPTIWTTHH | 50 |
DTWPAASDPL FSSNTNSDSS PELYVPFEDI VKVERPPSFV EETLVEKKED | 100 |
SFSTNTDSSS SHSQFRSSSP VSVLESSSSS SQTTNTTSLV LPGKHGRPRT | 150 |
KRPRPPVQDK DRVKDNVCGG DSRLIIRIPK QFLSDHNKMI NKKKKKKAKI | 200 |
TSSSSSSGID LEVNGNNVDS YSSEQYPLRK CMHCEVTKTP QWRLGPMGPK | 250 |
TLCNACGVRY KSGRLFPEYR PAASPTFTPA LHSNSHKKVA EMRNKRCSDG | 300 |
SYITEENDLQ GLIPNNAYIG VD | 350 |
|