fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G54990 SMZ SCHLAFMUTZE, Integrase-type DNA-binding superfamily protein (.1.2)

>AT3G54990.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HindIII, HpaI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 20, 219
EcoRI G|AATTC 155, 259
KpnI GGTAC|C 713
PstI CTGCA|G 125
StyI C|C[AT][AT]GG 346


Click here to view TAIR data

>AT3G54990.2 length:744
ATGTTGGATC TTAACCTAAA GATCTTTTCT TCTTATAACG AAGATCAAGA 
50
TCGGAAAGTA CCATTAATGA TCTCAACCAC CGGTGAAGAA GAATCTAACT 
100
CATCTTCCTC CTCCACAACA GACTCTGCAG CGAGAGATGC TTTCATCGCT 
150
TTTGGAATTC TCAAACGCGA CGATGACCTT GTTCCTCCTC CTCCTCCTCC 
200
TCCTCATAAA GAAACAGGAG ATCTCTTTCC GGTGGTGGCT GATGCTCGTC 
250
GGAATATAGA ATTCTCCGTG GAAGACAGTC ACTGGTTGAA TCTTTCTTCT 
300
TTACAAAGAA ATACACAGAA AATGGTGAAG AAGAGCAGAA GAGGACCAAG 
350
GTCTCGTAGC TCCCAATATC GTGGCGTCAC TTTTTACCGT CGCACCGGTC 
400
GTTGGGAATC TCATATTTGG GATTGTGGAA AGCAAGTTTA TTTGGGCGGG 
450
TTTGATACTG CTTACGCAGC AGCAAGGGCT TACGACCGAG CTGCTATCAA 
500
ATTCCGTGGT CTCGATGCAG ACATCAATTT CGTCGTGGAT GATTATAGGC 
550
ATGACATCGA TAAGATGAAG AATTTAAATA AGGTGGAGTT CGTGCAAACA 
600
CTTAGGCGAG AGAGTGCGAG TTTCGGAAGA GGAAGTTCCA AATACAAAGG 
650
CTTGGCTCTT CAAAAATGCA CCCAATTCAA AACTCATGAT CAGATTCATC 
700
TCTTCCAAAA CAGGTACCAT TTTGTTAGAC ACGTAATCTT TTGA
750

>AT3G54990.2 longest ORF length:247
MLDLNLKIFS SYNEDQDRKV PLMISTTGEE ESNSSSSSTT DSAARDAFIA 
50
FGILKRDDDL VPPPPPPPHK ETGDLFPVVA DARRNIEFSV EDSHWLNLSS 
100
LQRNTQKMVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG 
150
FDTAYAAARA YDRAAIKFRG LDADINFVVD DYRHDIDKMK NLNKVEFVQT 
200
LRRESASFGR GSSKYKGLAL QKCTQFKTHD QIHLFQNRYH FVRHVIF
250