Locus |
Common name |
Short description |
AT3G54990 |
SMZ |
SCHLAFMUTZE, Integrase-type DNA-binding superfamily protein (.1.2) |
>AT3G54990.2 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HindIII, HpaI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
BglII
| A|GATCT |
20, 219 |
EcoRI
| G|AATTC |
155, 259 |
KpnI
| GGTAC|C |
713 |
PstI
| CTGCA|G |
125 |
StyI
| C|C[AT][AT]GG |
346 |
Click here to view TAIR data
>AT3G54990.2 length:744
ATGTTGGATC TTAACCTAAA GATCTTTTCT TCTTATAACG AAGATCAAGA | 50 |
TCGGAAAGTA CCATTAATGA TCTCAACCAC CGGTGAAGAA GAATCTAACT | 100 |
CATCTTCCTC CTCCACAACA GACTCTGCAG CGAGAGATGC TTTCATCGCT | 150 |
TTTGGAATTC TCAAACGCGA CGATGACCTT GTTCCTCCTC CTCCTCCTCC | 200 |
TCCTCATAAA GAAACAGGAG ATCTCTTTCC GGTGGTGGCT GATGCTCGTC | 250 |
GGAATATAGA ATTCTCCGTG GAAGACAGTC ACTGGTTGAA TCTTTCTTCT | 300 |
TTACAAAGAA ATACACAGAA AATGGTGAAG AAGAGCAGAA GAGGACCAAG | 350 |
GTCTCGTAGC TCCCAATATC GTGGCGTCAC TTTTTACCGT CGCACCGGTC | 400 |
GTTGGGAATC TCATATTTGG GATTGTGGAA AGCAAGTTTA TTTGGGCGGG | 450 |
TTTGATACTG CTTACGCAGC AGCAAGGGCT TACGACCGAG CTGCTATCAA | 500 |
ATTCCGTGGT CTCGATGCAG ACATCAATTT CGTCGTGGAT GATTATAGGC | 550 |
ATGACATCGA TAAGATGAAG AATTTAAATA AGGTGGAGTT CGTGCAAACA | 600 |
CTTAGGCGAG AGAGTGCGAG TTTCGGAAGA GGAAGTTCCA AATACAAAGG | 650 |
CTTGGCTCTT CAAAAATGCA CCCAATTCAA AACTCATGAT CAGATTCATC | 700 |
TCTTCCAAAA CAGGTACCAT TTTGTTAGAC ACGTAATCTT TTGA | 750 |
>AT3G54990.2 longest ORF length:247
MLDLNLKIFS SYNEDQDRKV PLMISTTGEE ESNSSSSSTT DSAARDAFIA | 50 |
FGILKRDDDL VPPPPPPPHK ETGDLFPVVA DARRNIEFSV EDSHWLNLSS | 100 |
LQRNTQKMVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG | 150 |
FDTAYAAARA YDRAAIKFRG LDADINFVVD DYRHDIDKMK NLNKVEFVQT | 200 |
LRRESASFGR GSSKYKGLAL QKCTQFKTHD QIHLFQNRYH FVRHVIF | 250 |
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