fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G55560 AHL15, AGF2 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1)

>AT3G55560.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 126, 238, 244
BglII A|GATCT 521
HindIII A|AGCTT 390
PstI CTGCA|G 569
PvuII CAG|CTG 224
SacI GAGCT|C 602
StyI C|C[AT][AT]GG 10


Click here to view TAIR data

>AT3G55560.1 length:933
ATGGCGAATC CTTGGTGGGT AGGGAATGTT GCGATCGGTG GAGTTGAGAG 
50
TCCAGTGACG TCATCAGCTC CTTCTTTGCA CCACAGAAAC AGTAACAACA 
100
ACAACCCACC GACTATGACT CGTTCGGATC CAAGATTGGA CCATGACTTC 
150
ACCACCAACA ACAGTGGAAG CCCTAATACC CAGACTCAGA GCCAAGAAGA 
200
ACAGAACAGC AGAGACGAGC AACCAGCTGT TGAACCCGGA TCCGGATCCG 
250
GGTCTACGGG TCGTCGTCCT AGAGGTAGAC CTCCTGGTTC CAAGAACAAA 
300
CCAAAGAGTC CAGTTGTTGT TACCAAAGAA AGCCCTAACT CTCTCCAGAG 
350
CCATGTTCTT GAGATTGCTA CGGGAGCTGA CGTGGCGGAA AGCTTAAACG 
400
CCTTTGCTCG TAGACGCGGC CGGGGCGTTT CGGTGCTGAG CGGTAGTGGT 
450
TTGGTTACTA ATGTTACTCT GCGTCAGCCT GCTGCATCCG GTGGAGTTGT 
500
TAGTTTACGT GGTCAGTTTG AGATCTTGTC TATGTGTGGG GCTTTTCTTC 
550
CTACGTCTGG CTCTCCTGCT GCAGCCGCTG GTTTAACCAT TTACTTAGCT 
600
GGAGCTCAAG GTCAAGTTGT GGGAGGTGGA GTTGCTGGCC CGCTTATTGC 
650
CTCTGGACCC GTTATTGTGA TAGCTGCTAC GTTTTGCAAT GCCACTTATG 
700
AGAGGTTACC GATTGAGGAA GAACAACAGC AAGAGCAGCC GCTTCAACTA 
750
GAAGATGGGA AGAAGCAGAA AGAAGAGAAT GATGATAACG AGAGTGGGAA 
800
TAACGGAAAC GAAGGATCGA TGCAGCCGCC GATGTATAAT ATGCCTCCTA 
850
ATTTTATCCC AAATGGTCAT CAAATGGCTC AACACGACGT GTATTGGGGT 
900
GGTCCTCCGC CTCGTGCTCC TCCTTCGTAT TGA
950

>AT3G55560.1 longest ORF length:310
MANPWWVGNV AIGGVESPVT SSAPSLHHRN SNNNNPPTMT RSDPRLDHDF 
50
TTNNSGSPNT QTQSQEEQNS RDEQPAVEPG SGSGSTGRRP RGRPPGSKNK 
100
PKSPVVVTKE SPNSLQSHVL EIATGADVAE SLNAFARRRG RGVSVLSGSG 
150
LVTNVTLRQP AASGGVVSLR GQFEILSMCG AFLPTSGSPA AAAGLTIYLA 
200
GAQGQVVGGG VAGPLIASGP VIVIAATFCN ATYERLPIEE EQQQEQPLQL 
250
EDGKKQKEEN DDNESGNNGN EGSMQPPMYN MPPNFIPNGH QMAQHDVYWG 
300
GPPPRAPPSY 
350