fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G55770 WLIM2b WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7)

>AT3G55770.5 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 86
PstI CTGCA|G 545
PvuII CAG|CTG 133


Click here to view TAIR data

>AT3G55770.5 length:600
ATGTCTTTTA CAGGAACTCA ACAGAAATGC AAGGCTTGTG AGAAGACTGT 
50
TTATGCTGTT GAGCTTCTCT CTGCTGATGG AGTTGGATAT CACAAGTCTT 
100
GCTTCAAATG CACTCACTGC AAAAGCAGGC TTCAGCTGAG TAGTTACTCA 
150
TCAATGGAAG GTGTTTTGTA CTGTAAGCCT CATTTTGAGC AGCTCTTTAA 
200
GGAGAGTGGT AGTTTCAACA AGAACTTTCA GTCACCTGCA AAATCGGCTG 
250
ACAAATCAAC TCCTGAGCTG ACAAGGACGC CTAGCCGAGT TGCTGGCAGG 
300
TTCTCTGGTA CACAAGAGAA ATGCGCCACT TGTAGTAAAA CTGTGTATCC 
350
TATTGAAAAG GTAACAGTCG AGAGCCAGAC ATATCACAAG TCCTGCTTCA 
400
AGTGCTCACA TGGAGGTTGC CCAATTTCAC CTTCCAACTA CGCAGCTCTT 
450
GAAGGAATCC TGTACTGCAA GCACCATTTC GCTCAGCTCT TCAAGGAGAA 
500
GGGAAGTTAC AACCACTTAA TCAAATCCGC TTCCATCAAA CGCTCTGCAG 
550
CCGCAGCAGT CGCCGCCGGT GTACCAGCAG CCTCCGTTCC TGAATCTTAA 
600

>AT3G55770.5 longest ORF length:199
MSFTGTQQKC KACEKTVYAV ELLSADGVGY HKSCFKCTHC KSRLQLSSYS 
50
SMEGVLYCKP HFEQLFKESG SFNKNFQSPA KSADKSTPEL TRTPSRVAGR 
100
FSGTQEKCAT CSKTVYPIEK VTVESQTYHK SCFKCSHGGC PISPSNYAAL 
150
EGILYCKHHF AQLFKEKGSY NHLIKSASIK RSAAAAVAAG VPAASVPES
200