fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G57670 WIP2, NTT WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1)

>AT3G57670.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, PstI, PvuII, SacI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BamHI G|GATCC 608
BglII A|GATCT 1015
NcoI C|CATGG 296
NdeI CA|TATG 703, 987
SalI G|TCGAC 304
StyI C|C[AT][AT]GG 296, 829
XhoI C|TCGAG 450


Click here to view TAIR data

>AT3G57670.1 length:1152
ATGACTGATC CTTATTCCAA TTTCTTCACA GACTGGTTCA AGTCTAATCC 
50
TTTTCACCAT TACCCTAATT CCTCCACTAA CCCCTCTCCT CATCCTCTTC 
100
CTCCTGTTAC TCCTCCCTCT TCCTTCTTCT TCTTCCCTCA ATCCGGAGAC 
150
CTCCGCCGTC CACCGCCGCC ACCAACTCCT CCTCCTTCTC CTCCTCTCCG 
200
AGAAGCCCTC CCTCTCCTCA GCCTCAGCCC CGCCAACAAA CAACAAGACC 
250
ACCATCACAA CCATGACCAC CTTATTCAAG AACCACCTTC AACCTCCATG 
300
GATGTCGACT ACGATCATCA CCATCAAGAT GATCATCATA ACCTCGATGA 
350
CGATGACCAT GACGTCACCG TTGCTCTTCA CATAGGCCTT CCAAGCCCTA 
400
GTGCTCAAGA GATGGCCTCT TTGCTCATGA TGTCTTCTTC TTCCTCTTCC 
450
TCGAGGACCA CTCATCATCA CGAGGACATG AATCACAAGA AAGACCTCGA 
500
CCATGAGTAC AGCCACGGAG CTGTCGGAGG AGGAGAAGAT GACGATGAAG 
550
ATTCAGTCGG CGGAGACGGC GGCTGTAGAA TCAGCAGACT CAACAAGGGT 
600
CAATATTGGA TCCCTACACC TTCTCAGATT CTCATTGGCC CTACTCAGTT 
650
CTCATGTCCT GTTTGCTTCA AAACCTTCAA CAGATACAAT AACATGCAGA 
700
TGCATATGTG GGGACATGGA TCACAATACA GAAAAGGACC TGAATCTCTA 
750
AGGGGAACAC AACCAACAGG AATGCTAAGG CTTCCGTGCT ATTGCTGCGC 
800
CCCAGGCTGT CGCAACAACA TTGACCATCC AAGGGCAAAG CCTCTCAAAG 
850
ACTTCAGAAC CCTTCAAACA CATTACAAGA GAAAACATGG GATCAAACCT 
900
TTCATGTGTA GGAAATGTGG AAAGGCTTTC GCAGTCCGAG GGGACTGGAG 
950
AACACATGAG AAGAATTGTG GCAAACTTTG GTATTGCATA TGTGGATCTG 
1000
ATTTCAAGCA CAAGAGATCT CTCAAAGATC ACATCAAGGC TTTTGGGAAT 
1050
GGTCATGGAG CCTACGGAAT TGATGGGTTT GATGAAGAAG ATGAGCCTGC 
1100
CTCTGAGGTA GAACAATTAG ACAATGATCA TGAGTCAATG CAGTCTAAAT 
1150
AG
1200

>AT3G57670.1 longest ORF length:383
MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD 
50
LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM 
100
DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS 
150
SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG 
200
QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL 
250
RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP 
300
FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN 
350
GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
400