fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G57800 bHLH060 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)

>AT3G57800.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, NcoI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
KpnI GGTAC|C 874
NdeI CA|TATG 599
SacI GAGCT|C 381, 614
SpeI A|CTAGT 102
StyI C|C[AT][AT]GG 862


Click here to view TAIR data

>AT3G57800.1 length:1281
ATGGATCTGA CTGGAGGATT TGGAGCTAGA TCCGGCGGTG TTGGACCGTG 
50
CCGGGAACCA ATAGGCCTTG AATCGCTACA TCTCGGTGAC GAATTTCGGC 
100
AACTAGTGAC GACTTTACCT CCCGAGAACC CCGGCGGTTC GTTCACGGCT 
150
TTGCTTGAGC TTCCACCTAC ACAAGCAGTG GAGCTTCTCC ATTTCACTGA 
200
TTCTTCGTCT TCTCAACAAG CGGCAGTGAC AGGGATCGGT GGAGAGATTC 
250
CTCCGCCGCT TCACTCTTTC GGTGGGACAT TGGCTTTTCC TTCTAACTCA 
300
GTTCTCATGG AGCGAGCAGC TCGTTTCTCG GTGATTGCCA CTGAGCAACA 
350
AAACGGAAAT ATCTCCGGGG AGACTCCGAC GAGCTCTGTA CCTTCCAATT 
400
CAAGTGCTAA TCTCGACAGA GTCAAGACGG AGCCTGCTGA GACCGATTCA 
450
TCTCAGCGGT TGATTTCTGA TTCAGCGATT GAGAATCAAA TCCCTTGCCC 
500
TAACCAGAAC AATCGAAATG GGAAGAGGAA AGATTTCGAA AAGAAGGGTA 
550
AAAGCTCGAC GAAGAAGAAC AAAAGCTCTG AAGAGAACGA GAAGCTGCCA 
600
TATGTTCACG TTAGAGCTCG TCGTGGTCAA GCAACCGATA GCCATAGCTT 
650
AGCAGAACGA GCAAGAAGAG AGAAGATAAA TGCACGAATG AAGCTGTTAC 
700
AGGAACTGGT CCCAGGCTGT GATAAGGGGA CAGATTTTGG TGGAAAGATC 
750
AAGATCAAAG TGTGTTTTGG GGTCCATCTT TTGATGATAA GTGGGAAAAA 
800
AGTTGCAATC TTTCTATGGA AGGTGAGCTG TGAGGACTTG ATTGATTGTT 
850
CCTTTAGCCC CCCTAGGATT CAAGGTACCG CGCTGGTGCT GGATGAAATC 
900
ATTAACCATG TCCAGTCATT ACAACGTCAA GTGGAGATGC TATCAATGAG 
950
ACTTGCTGCG GTAAACCCCA GAATCGACTT CAATCTCGAC ACCATATTGG 
1000
CTTCAGAAAA CGGTTCTTTA ATGGATGGGA GCTTCAATGC CGCACCAATG 
1050
CAGCTTGCTT GGCCTCAGCA AGCCATTGAG ACCGAACAGT CCTTTCATCA 
1100
CCGGCAACTG CAACAACCAC CAACACAACA ATGGCCTTTT GACGGCTTGA 
1150
ACCAGCCGGT ATGGGGAAGA GAAGAGGATC AAGCTCATGG CAATGATAAC 
1200
AGCAATTTGA TGGCAGTTTC TGAAAATGTA ATGGTGGCTT CTGCTAATTT 
1250
GCACCCAAAT CAGGTCAAAA TGGAGCTGTA A
1300

>AT3G57800.1 longest ORF length:426
MDLTGGFGAR SGGVGPCREP IGLESLHLGD EFRQLVTTLP PENPGGSFTA 
50
LLELPPTQAV ELLHFTDSSS SQQAAVTGIG GEIPPPLHSF GGTLAFPSNS 
100
VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS 
150
SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP 
200
YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKGTDFGGKI 
250
KIKVCFGVHL LMISGKKVAI FLWKVSCEDL IDCSFSPPRI QGTALVLDEI 
300
INHVQSLQRQ VEMLSMRLAA VNPRIDFNLD TILASENGSL MDGSFNAAPM 
350
QLAWPQQAIE TEQSFHHRQL QQPPTQQWPF DGLNQPVWGR EEDQAHGNDN 
400
SNLMAVSENV MVASANLHPN QVKMEL
450