fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G58070 GIS GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1)

>AT3G58070.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
HpaI GTT|AAC 444
SpeI A|CTAGT 589
StyI C|C[AT][AT]GG 315


Click here to view TAIR data

>AT3G58070.1 length:762
ATGGACGAGG CTACCGGAGA AACAGAAACT CAAGATTTCA TGAACGTCGA 
50
ATCCTTCTCT CAGCTTCCTT TCATTCGCCG TCCTAAAGAT AAGAACCCTA 
100
AACCCATTCG TGTCTTCGGA AAAGATTTCA CCGGCAGAGA TTTCTCTATT 
150
ACTACCGGTC AAGAAGACTA CACCGATCCT TACCAGACCA AAAACAAAGA 
200
AGAAGAAGAG GAAGAAGACC AAACCGGAGA CAACAGTACG GACAATAATA 
250
GCATCAGCCA CAACAGGAGA TTCGAGTGTC ACTATTGCTT TAGAAATTTT 
300
CCTACTTCAC AAGCCCTAGG TGGACACCAA AACGCTCACA AACGCGAACG 
350
TCAGCTTGCC AAACGCGGTG TTTCCTCTTA CTTTTATCAT CCTGACAATA 
400
ACCCTTACAG TTACCGTCAT TACCCGTCGT GGACCAATGG TCCGTTAACC 
450
GCGGCTAGGT CCTATGGAGG ATTTTCTTCT GGTCCTAAGC CGTCGGGGTA 
500
TTATACACGA CCCAGCTATG GGAGTCAGTT AGGACTATGG CGTCTACCGC 
550
CTCGCGTTCA AGGCGTTTAT AACTCAAACG CAGCGTTTAC TAGTAATGGC 
600
TCTTCTTCTT CTTCTAATTC GACTTTACCG TTGTTGACCC GTTCTCAAAC 
650
TCAACTATCA TCGCAAGTGG GTGGCTCCGC TGCTCAGAAC AGAATGTCAT 
700
CGTACGGTTA CGGATTGAGC CCTAACGTGC AAGATCATGT GAGTCTCGAT 
750
CTTCATCTTT AA
800

>AT3G58070.1 longest ORF length:253
MDEATGETET QDFMNVESFS QLPFIRRPKD KNPKPIRVFG KDFTGRDFSI 
50
TTGQEDYTDP YQTKNKEEEE EEDQTGDNST DNNSISHNRR FECHYCFRNF 
100
PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT 
150
AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG 
200
SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD 
250
LHL
300