fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G59060 PIF5, PIL6 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4)

>AT3G59060.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NheI, NotI, PacI, SacI, SalI, SpeI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 872
NcoI C|CATGG 410, 719
NdeI CA|TATG 1315
PstI CTGCA|G 855
PvuII CAG|CTG 770
SmaI CCC|GGG 994
StyI C|C[AT][AT]GG 410, 719
XbaI T|CTAGA 246


Click here to view TAIR data

>AT3G59060.2 length:1335
ATGGAACAAG TGTTTGCTGA TTGGAATTTT GAAGATAATT TTCACATGTC 
50
CACTAATAAA AGATCAATCA GACCAGAAGA TGAATTAGTG GAGCTATTGT 
100
GGAGAGATGG TCAAGTGGTT TTACAAAGCC AAGCTCGTAG AGAACCGTCA 
150
GTCCAAGTCC AAACCCACAA ACAAGAAACC CTAAGAAAAC CCAACAATAT 
200
TTTTCTTGAC AACCAAGAAA CAGTACAAAA GCCTAACTAC GCTGCTCTAG 
250
ATGATCAAGA AACCGTCTCC TGGATACAAT ACCCTCCGGA TGACGTCATC 
300
GACCCTTTCG AATCCGAGTT CTCCTCTCAT TTCTTCTCTT CGATCGATCA 
350
CCTCGGAGGT CCTGAGAAGC CACGAACGAT CGAAGAGACA GTTAAGCATG 
400
AGGCTCAAGC CATGGCTCCT CCTAAGTTTA GATCCTCGGT TATAACAGTC 
450
GGACCGAGTC ATTGCGGCAG CAACCAGTCA ACAAATATTC ATCAGGCCAC 
500
TACACTTCCG GTTTCTATGA GTGATAGAAG CAAGAACGTC GAAGAAAGAC 
550
TTGACACTTC GTCAGGTGGC TCCTCCGGTT GCAGCTATGG AAGGAACAAC 
600
AAAGAAACCG TTAGTGGAAC AAGTGTAACC ATTGACCGTA AAAGAAAACA 
650
TGTTATGGAT GCTGATCAAG AATCTGTGTC TCAATCAGAT ATAGGTTTGA 
700
CCTCAACCGA TGATCAAACC ATGGGTAACA AATCGAGCCA ACGGTCAGGA 
750
TCTACTCGAA GAAGCCGTGC AGCTGAAGTT CATAATCTCT CAGAAAGGAG 
800
GAGGAGAGAT CGGATCAATG AAAGAATGAA AGCTCTTCAA GAACTCATAC 
850
CTCACTGCAG CAGAACAGAT AAAGCTTCGA TATTGGATGA AGCAATTGAT 
900
TACTTAAAAT CACTTCAAAT GCAACTCCAA GTGATGTGGA TGGGAAGTGG 
950
AATGGCGGCG GCGGCAGCAG CAGCAGCAAG TCCGATGATG TTTCCCGGGG 
1000
TACAATCATC TCCATACATT AATCAGATGG CTATGCAAAG TCAGATGCAA 
1050
TTGTCTCAAT TCCCGGTTAT GAACCGGTCC GCTCCGCAGA ACCATCCCGG 
1100
TTTAGTATGT CAAAACCCGG TACAGTTGCA GCTCCAAGCA CAGAACCAAA 
1150
TCTTATCGGA GCAGCTCGCT AGGTACATGG GCGGGATTCC CCAGATGCCG 
1200
CCGGCGGGAA ATCAGATGCA GACCGTGCAA CAACAACCAG CGGACATGTT 
1250
GGGATTTGGA TCTCCGGCGG GACCGCAAAG TCAACTGTCG GCACCGGCGA 
1300
CCACCGACAG TCTTCATATG GGTAAAATAG GCTGA
1350

>AT3G59060.2 longest ORF length:444
MEQVFADWNF EDNFHMSTNK RSIRPEDELV ELLWRDGQVV LQSQARREPS 
50
VQVQTHKQET LRKPNNIFLD NQETVQKPNY AALDDQETVS WIQYPPDDVI 
100
DPFESEFSSH FFSSIDHLGG PEKPRTIEET VKHEAQAMAP PKFRSSVITV 
150
GPSHCGSNQS TNIHQATTLP VSMSDRSKNV EERLDTSSGG SSGCSYGRNN 
200
KETVSGTSVT IDRKRKHVMD ADQESVSQSD IGLTSTDDQT MGNKSSQRSG 
250
STRRSRAAEV HNLSERRRRD RINERMKALQ ELIPHCSRTD KASILDEAID 
300
YLKSLQMQLQ VMWMGSGMAA AAAAAASPMM FPGVQSSPYI NQMAMQSQMQ 
350
LSQFPVMNRS APQNHPGLVC QNPVQLQLQA QNQILSEQLA RYMGGIPQMP 
400
PAGNQMQTVQ QQPADMLGFG SPAGPQSQLS APATTDSLHM GKIG
450