fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G61890 ATHB12, ATHB-12 ARABIDOPSIS THALIANA HOMEOBOX 12, homeobox 12 (.1)

>AT3G61890.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HpaII, HphI, Hpy99I, HpyCH4III, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, MspI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AluI AG|CT 126, 178, 186, 351, 573, 595
BanII GPuGCPy|C 236
BclI T|GATCA 417, 567
BfaI C|TAG 180, 188, 666
BsaJI C|CNNGG 160, 489
Bsp1286I G[GAT]GC[CAT]|C 236
BspHI T|CATGA 320, 402, 570
BsrI ACTGGN| 426, 686
DdeI C|TNAG 142, 250, 279, 349, 432, 622, 656
DpnI GA-CH3|TC 112, 416, 566
DpnII |GATC 112, 416, 566
Fnu4HI GC|NGC 194, 353, 436, 670
HaeIII GG|CC 381
HinfI G|ANTC 138, 447, 648
Hpy188I TCN|GA 141, 348, 621, 645
HpyCH4V TG|CA 195, 354, 375
MboI |GATC 112, 416, 566
MseI T|TAA 531
MslI CAPyNN|NNPuTG 55
MwoI GCNNNNN|NNGC 31, 194
N.BstNBI GAGTCNNNN|N 143, 452
NlaIII CATG| 49, 55, 319, 401, 569
PstI CTGCA|G 355
Sau3AI |GATC 112, 416, 566
SfcI C|TPuPyAG 355
SmlI C|TPyPuAG 124, 154, 259
StuI AGG|CCT 382
StyI C|C[AT][AT]GG 489
Taqƒ¿I T|CGA 238, 552
TfiI G|A[AT]TC 648
TseI G|C[AT]GC 194, 353, 436, 670
Tsp45I |GT[CG]AC 119
Tsp509I |AATT 287, 296, 309, 626, 641, 674


Click here to view TAIR data

>AT3G61890.1 length:708
ATGGAAGAAG GAGATTTTTT CAACTGCTGT TTCAGCGAGA TTAGTAGTGG 
50
CATGACCATG AATAAGAAGA AGATGAAGAA GAGCAATAAC CAAAAGAGGT 
100
TTAGCGAGGA ACAGATCAAG TCACTTGAGC TTATATTTGA GTCTGAGACG 
150
AGGCTTGAGC CGAGGAAGAA GGTTCAGGTA GCTAGAGAGC TAGGGCTGCA 
200
ACCAAGACAA GTGGCTATAT GGTTTCAAAA CAAGAGGGCT CGATGGAAAA 
250
CTAAGCAACT TGAGAAAGAG TATAACACTC TTAGAGCCAA TTACAACAAT 
300
TTGGCTTCAC AATTTGAAAT CATGAAGAAA GAAAAGCAAT CTCTGGTCTC 
350
TGAGCTGCAG AGACTAAACG AAGAGATGCA AAGGCCTAAA GAAGAAAAGC 
400
ATCATGAGTG TTGTGGTGAT CAAGGACTGG CTCTAAGCAG CAGCACAGAG 
450
TCGCATAATG GAAAGAGTGA GCCAGAAGGG AGGTTAGACC AAGGGAGTGT 
500
TCTATGTAAT GATGGTGATT ACAACAACAA CATTAAAACA GAGTATTTTG 
550
GGTTCGAGGA AGAGACTGAT CATGAGCTGA TGAACATTGT GGAGAAAGCT 
600
GATGATAGTT GCTTGACATC TTCTGAGAAT TGGGGAGGTT TCAATTCTGA 
650
TTCTCTCTTA GACCAATCTA GCAGCAATTA CCCTAACTGG TGGGAGTTTT 
700
GGTCATAA
750

>AT3G61890.1 longest ORF length:235
MEEGDFFNCC FSEISSGMTM NKKKMKKSNN QKRFSEEQIK SLELIFESET 
50
RLEPRKKVQV ARELGLQPRQ VAIWFQNKRA RWKTKQLEKE YNTLRANYNN 
100
LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE 
150
SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA 
200
DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
250