| Locus |
Common name |
Short description |
| AT3G61890 |
ATHB12, ATHB-12 |
ARABIDOPSIS THALIANA HOMEOBOX 12, homeobox 12 (.1) |
>AT3G61890.1 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HpaII, HphI, Hpy99I, HpyCH4III, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, MspI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
| Name |
Recognition sequence |
Cut positions |
| AluI
| AG|CT |
126, 178, 186, 351, 573, 595 |
| BanII
| GPuGCPy|C |
236 |
| BclI
| T|GATCA |
417, 567 |
| BfaI
| C|TAG |
180, 188, 666 |
| BsaJI
| C|CNNGG |
160, 489 |
| Bsp1286I
| G[GAT]GC[CAT]|C |
236 |
| BspHI
| T|CATGA |
320, 402, 570 |
| BsrI
| ACTGGN| |
426, 686 |
| DdeI
| C|TNAG |
142, 250, 279, 349, 432, 622, 656 |
| DpnI
| GA-CH3|TC |
112, 416, 566 |
| DpnII
| |GATC |
112, 416, 566 |
| Fnu4HI
| GC|NGC |
194, 353, 436, 670 |
| HaeIII
| GG|CC |
381 |
| HinfI
| G|ANTC |
138, 447, 648 |
| Hpy188I
| TCN|GA |
141, 348, 621, 645 |
| HpyCH4V
| TG|CA |
195, 354, 375 |
| MboI
| |GATC |
112, 416, 566 |
| MseI
| T|TAA |
531 |
| MslI
| CAPyNN|NNPuTG |
55 |
| MwoI
| GCNNNNN|NNGC |
31, 194 |
| N.BstNBI
| GAGTCNNNN|N |
143, 452 |
| NlaIII
| CATG| |
49, 55, 319, 401, 569 |
| PstI
| CTGCA|G |
355 |
| Sau3AI
| |GATC |
112, 416, 566 |
| SfcI
| C|TPuPyAG |
355 |
| SmlI
| C|TPyPuAG |
124, 154, 259 |
| StuI
| AGG|CCT |
382 |
| StyI
| C|C[AT][AT]GG |
489 |
| Taqƒ¿I
| T|CGA |
238, 552 |
| TfiI
| G|A[AT]TC |
648 |
| TseI
| G|C[AT]GC |
194, 353, 436, 670 |
| Tsp45I
| |GT[CG]AC |
119 |
| Tsp509I
| |AATT |
287, 296, 309, 626, 641, 674 |
Click here to view TAIR data
>AT3G61890.1 length:708
ATGGAAGAAG GAGATTTTTT CAACTGCTGT TTCAGCGAGA TTAGTAGTGG | 50 |
CATGACCATG AATAAGAAGA AGATGAAGAA GAGCAATAAC CAAAAGAGGT | 100 |
TTAGCGAGGA ACAGATCAAG TCACTTGAGC TTATATTTGA GTCTGAGACG | 150 |
AGGCTTGAGC CGAGGAAGAA GGTTCAGGTA GCTAGAGAGC TAGGGCTGCA | 200 |
ACCAAGACAA GTGGCTATAT GGTTTCAAAA CAAGAGGGCT CGATGGAAAA | 250 |
CTAAGCAACT TGAGAAAGAG TATAACACTC TTAGAGCCAA TTACAACAAT | 300 |
TTGGCTTCAC AATTTGAAAT CATGAAGAAA GAAAAGCAAT CTCTGGTCTC | 350 |
TGAGCTGCAG AGACTAAACG AAGAGATGCA AAGGCCTAAA GAAGAAAAGC | 400 |
ATCATGAGTG TTGTGGTGAT CAAGGACTGG CTCTAAGCAG CAGCACAGAG | 450 |
TCGCATAATG GAAAGAGTGA GCCAGAAGGG AGGTTAGACC AAGGGAGTGT | 500 |
TCTATGTAAT GATGGTGATT ACAACAACAA CATTAAAACA GAGTATTTTG | 550 |
GGTTCGAGGA AGAGACTGAT CATGAGCTGA TGAACATTGT GGAGAAAGCT | 600 |
GATGATAGTT GCTTGACATC TTCTGAGAAT TGGGGAGGTT TCAATTCTGA | 650 |
TTCTCTCTTA GACCAATCTA GCAGCAATTA CCCTAACTGG TGGGAGTTTT | 700 |
GGTCATAA | 750 |
>AT3G61890.1 longest ORF length:235
MEEGDFFNCC FSEISSGMTM NKKKMKKSNN QKRFSEEQIK SLELIFESET | 50 |
RLEPRKKVQV ARELGLQPRQ VAIWFQNKRA RWKTKQLEKE YNTLRANYNN | 100 |
LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE | 150 |
SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA | 200 |
DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS | 250 |
|