fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G61950 bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)

>AT3G61950.1 CDS map

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Uncut enzymes: Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AlwI, Aor51HI(Eco47III), AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, ClaI, DraI, EaeI, EagI, EarI, EciI, EcoNI, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PsiI, PspGI, PstI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, Tsp45I, Tth111I, XbaI, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 563
AciI C|CGC 310
AgeI A|CCGGT 291
AhdI GACNNN|NNGTC 1017
AluI AG|CT 92, 122, 334, 634, 829, 918
AlwNI CAGNNN|CTG 154
ApaI GGGCC|C 596
ApaLI G|TGCAC 410
ApoI Pu|AATTPy 353
AvaI C|PyCGPuG 64, 676
AvaII G|G[AT]CC 293, 671
BanII GPuGCPy|C 596
BfaI C|TAG 462
BsaAI PyAC|GTPu 664
BsaHI GPu|CGPyC 563
BsaJI C|CNNGG 241
BsaWI [AT]|CCGG[AT] 48, 291
BsiEI CGPuPy|CG 39
BsiHKAI G[AT]GC[AT]|C 410
BslI CCNNNNN|NNGG 317, 995
BsoBI C|PyCGPuG 64, 676
Bsp1286I G[GAT]GC[CAT]|C 410, 596
BsrFI Pu|CCGGPy 291
BssKI |CCNGG 593
BstF5I GGATGNN| 52
Cfr10I [AG]|CCGG[TC] 291
DdeI C|TNAG 301, 405, 764, 1013
DpnI GA-CH3|TC 38, 803
DpnII |GATC 38, 803
DraIII CACNNN|GTG 407
DrdI GACNNNN|NNGTC 216
EcoO109I PuG|GNCCPy 597, 672
EcoRV GAT|ATC 257
Fnu4HI GC|NGC 155, 446, 1038
HaeIII GG|CC 595
HhaI GCG|C 427
HinP1I G|CGC 427
HindIII A|AGCTT 93, 123, 635, 919
HinfI G|ANTC 273, 521, 699, 901, 1017
HpaII C|CGG 47, 290, 592
Hpy188I TCN|GA 206, 300, 1049, 1064
Hpy99I CG[AT]CG| 775, 1025
HpyCH4III ACN|GT 135, 215, 730, 834, 930
HpyCH4IV A|CGT 562, 663
HpyCH4V TG|CA 79, 156, 409
MboI |GATC 38, 803
MseI T|TAA 753, 858, 921
MspI C|CGG 47, 290, 592
MwoI GCNNNNN|NNGC 333
N.BstNBI GAGTCNNNN|N 1022
NciI CC|[CG]GG 593
NlaIII CATG| 316, 373, 848
NlaIV GGN|NCC 237, 325, 596
PaeR7I C|TCGAG 64, 676
PpuMI PuG|G[AT]CCPy 672
PspOMI G|GGCCC 596
PvuI CGAT|CG 39
Sau3AI |GATC 38, 803
Sau96I G|GNCC 293, 595, 671
ScrFI CC|NGG 593
SfcI C|TPuPyAG 148, 833
SmlI C|TPyPuAG 64, 232, 268, 452, 676, 991
StyI C|C[AT][AT]GG 241
Taqƒ¿I T|CGA 36, 40, 63, 249, 675, 696, 776, 825, 1056
TfiI G|A[AT]TC 273, 521, 699, 901
TliI C|TCGAG 64, 676
TseI G|C[AT]GC 155, 446
Tsp509I |AATT 279, 352, 1069
TspRI NNCA[CG]TGNN| 409, 733, 837, 931
XcmI CCANNNNN|NNNNTGG 317
XhoI C|TCGAG 64, 676
XmnI GAANN|NNTTC 8


Click here to view TAIR data

>AT3G61950.1 length:1077
ATGGAAAGGT TTCAAGGACA CATCAACCCC TGTTTCTTCG ATCGAAAACC 
50
GGATGTGAGA AGCCTCGAGG TTCAAGGATT TGCAGAGGCT CAAAGCTTTG 
100
CTTTCAAAGA AAAAGAGGAA GAAAGCTTAC AAGATACAGT TCCATTTCTA 
150
CAGATGCTGC AAAGTGAAGA CCCCTCATCG TTTTTTTCAA TCAAAGAGCC 
200
AAACTTTCTG ACGCTACTGT CTCTTCAAAC CCTCAAGGAG CCTTGGGAAC 
250
TCGAAAGATA TCTTTCACTT GAGGATTCAC AATTTCATTC ACCGGTCCAA 
300
TCTGAGACCA ACCGCTTCAT GGAAGGAGCC AATCAAGCTG TGTCAAGCCA 
350
AGAAATTCCC TTTAGCCAAG CAAACATGAC ACTCCCTTCT TCTACCTCAT 
400
CACCACTCAG TGCACATTCA AGACGAAAGC GCAAAATCAA CCACTTGCTG 
450
CCTCAAGAAA TGACTAGAGA AAAGAGAAAG AGGAGGAAAA CAAAACCAAG 
500
TAAAAACAAT GAAGAGATTG AGAATCAAAG AATAAACCAC ATTGCTGTTG 
550
AACGAAACAG AAGACGTCAA ATGAACGAAC ATATCAACTC TCTCCGGGCC 
600
CTTCTCCCAC CTTCCTACAT CCAACGAGGA GACCAAGCTT CCATAGTAGG 
650
AGGAGCAATA AACTACGTGA AGGTCCTCGA GCAAATCATA CAATCTCTCG 
700
AATCGCAAAA GAGAACGCAA CAACAAAGTA ACAGTGAGGT AGTAGAAAAC 
750
GCACTTAATC ATCTCTCAGG CATTTCGTCG AACGACCTGT GGACAACTCT 
800
TGAAGATCAA ACTTGTATCC CCAAAATCGA AGCTACAGTG ATACAAAACC 
850
ATGTCAGCCT TAAAGTTCAA TGTGAGAAGA AACAAGGACA ACTTCTCAAA 
900
GGAATCATAT CACTTGAAAA GCTTAAACTC ACTGTTCTTC ATCTCAATAT 
950
CACTACTTCG TCTCATTCCT CTGTTTCTTA TTCCTTCAAC CTCAAGATGG 
1000
AAGATGAGTG CGACTTAGAG TCAGCCGACG AGATTACGGC GGCTGTTCAT 
1050
CGGATTTTCG ATATTCCGAC AATTTGA
1100

>AT3G61950.1 longest ORF length:358
MERFQGHINP CFFDRKPDVR SLEVQGFAEA QSFAFKEKEE ESLQDTVPFL 
50
QMLQSEDPSS FFSIKEPNFL TLLSLQTLKE PWELERYLSL EDSQFHSPVQ 
100
SETNRFMEGA NQAVSSQEIP FSQANMTLPS STSSPLSAHS RRKRKINHLL 
150
PQEMTREKRK RRKTKPSKNN EEIENQRINH IAVERNRRRQ MNEHINSLRA 
200
LLPPSYIQRG DQASIVGGAI NYVKVLEQII QSLESQKRTQ QQSNSEVVEN 
250
ALNHLSGISS NDLWTTLEDQ TCIPKIEATV IQNHVSLKVQ CEKKQGQLLK 
300
GIISLEKLKL TVLHLNITTS SHSSVSYSFN LKMEDECDLE SADEITAAVH 
350
RIFDIPTI
400