fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G61950 bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)

>AT3G61950.2 CDS map

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Uncut enzymes: Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AlwI, AlwNI, Aor51HI(Eco47III), AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, ClaI, DraI, EaeI, EagI, EarI, EciI, EcoNI, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PsiI, PspGI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, Tsp45I, Tth111I, XbaI, XmaI, XmnI
Name Recognition sequence Cut positions
AatII GACGT|C 410
AciI C|CGC 157
AgeI A|CCGGT 138
AhdI GACNNN|NNGTC 864
AluI AG|CT 181, 481, 676, 765
ApaI GGGCC|C 443
ApaLI G|TGCAC 257
ApoI Pu|AATTPy 200
AvaI C|PyCGPuG 523
AvaII G|G[AT]CC 140, 518
BanII GPuGCPy|C 443
BfaI C|TAG 309
BsaAI PyAC|GTPu 511
BsaHI GPu|CGPyC 410
BsaJI C|CNNGG 88
BsaWI [AT]|CCGG[AT] 138
BsiHKAI G[AT]GC[AT]|C 257
BslI CCNNNNN|NNGG 164, 842
BsoBI C|PyCGPuG 523
Bsp1286I G[GAT]GC[CAT]|C 257, 443
BsrFI Pu|CCGGPy 138
BssKI |CCNGG 440
Cfr10I [AG]|CCGG[TC] 138
DdeI C|TNAG 148, 252, 611, 860
DpnI GA-CH3|TC 650
DpnII |GATC 650
DraIII CACNNN|GTG 254
DrdI GACNNNN|NNGTC 63
EcoO109I PuG|GNCCPy 444, 519
EcoRV GAT|ATC 104
Fnu4HI GC|NGC 2, 293, 885
HaeIII GG|CC 442
HhaI GCG|C 274
HinP1I G|CGC 274
HindIII A|AGCTT 482, 766
HinfI G|ANTC 120, 368, 546, 748, 864
HpaII C|CGG 137, 439
Hpy188I TCN|GA 53, 147, 896, 911
Hpy99I CG[AT]CG| 622, 872
HpyCH4III ACN|GT 62, 577, 681, 777
HpyCH4IV A|CGT 409, 510
HpyCH4V TG|CA 3, 256
MboI |GATC 650
MseI T|TAA 600, 705, 768
MspI C|CGG 137, 439
MwoI GCNNNNN|NNGC 180
N.BstNBI GAGTCNNNN|N 869
NciI CC|[CG]GG 440
NlaIII CATG| 163, 220, 695
NlaIV GGN|NCC 84, 172, 443
PaeR7I C|TCGAG 523
PpuMI PuG|G[AT]CCPy 519
PspOMI G|GGCCC 443
Sau3AI |GATC 650
Sau96I G|GNCC 140, 442, 518
ScrFI CC|NGG 440
SfcI C|TPuPyAG 680
SmlI C|TPyPuAG 79, 115, 299, 523, 838
StyI C|C[AT][AT]GG 88
Taqƒ¿I T|CGA 96, 522, 543, 623, 672, 903
TfiI G|A[AT]TC 120, 368, 546, 748
TliI C|TCGAG 523
TseI G|C[AT]GC 2, 293
Tsp509I |AATT 126, 199, 916
TspRI NNCA[CG]TGNN| 256, 580, 684, 778
XcmI CCANNNNN|NNNNTGG 164
XhoI C|TCGAG 523


Click here to view TAIR data

>AT3G61950.2 length:924
ATGCTGCAAA GTGAAGACCC CTCATCGTTT TTTTCAATCA AAGAGCCAAA 
50
CTTTCTGACG CTACTGTCTC TTCAAACCCT CAAGGAGCCT TGGGAACTCG 
100
AAAGATATCT TTCACTTGAG GATTCACAAT TTCATTCACC GGTCCAATCT 
150
GAGACCAACC GCTTCATGGA AGGAGCCAAT CAAGCTGTGT CAAGCCAAGA 
200
AATTCCCTTT AGCCAAGCAA ACATGACACT CCCTTCTTCT ACCTCATCAC 
250
CACTCAGTGC ACATTCAAGA CGAAAGCGCA AAATCAACCA CTTGCTGCCT 
300
CAAGAAATGA CTAGAGAAAA GAGAAAGAGG AGGAAAACAA AACCAAGTAA 
350
AAACAATGAA GAGATTGAGA ATCAAAGAAT AAACCACATT GCTGTTGAAC 
400
GAAACAGAAG ACGTCAAATG AACGAACATA TCAACTCTCT CCGGGCCCTT 
450
CTCCCACCTT CCTACATCCA ACGAGGAGAC CAAGCTTCCA TAGTAGGAGG 
500
AGCAATAAAC TACGTGAAGG TCCTCGAGCA AATCATACAA TCTCTCGAAT 
550
CGCAAAAGAG AACGCAACAA CAAAGTAACA GTGAGGTAGT AGAAAACGCA 
600
CTTAATCATC TCTCAGGCAT TTCGTCGAAC GACCTGTGGA CAACTCTTGA 
650
AGATCAAACT TGTATCCCCA AAATCGAAGC TACAGTGATA CAAAACCATG 
700
TCAGCCTTAA AGTTCAATGT GAGAAGAAAC AAGGACAACT TCTCAAAGGA 
750
ATCATATCAC TTGAAAAGCT TAAACTCACT GTTCTTCATC TCAATATCAC 
800
TACTTCGTCT CATTCCTCTG TTTCTTATTC CTTCAACCTC AAGATGGAAG 
850
ATGAGTGCGA CTTAGAGTCA GCCGACGAGA TTACGGCGGC TGTTCATCGG 
900
ATTTTCGATA TTCCGACAAT TTGA
950

>AT3G61950.2 longest ORF length:307
MLQSEDPSSF FSIKEPNFLT LLSLQTLKEP WELERYLSLE DSQFHSPVQS 
50
ETNRFMEGAN QAVSSQEIPF SQANMTLPSS TSSPLSAHSR RKRKINHLLP 
100
QEMTREKRKR RKTKPSKNNE EIENQRINHI AVERNRRRQM NEHINSLRAL 
150
LPPSYIQRGD QASIVGGAIN YVKVLEQIIQ SLESQKRTQQ QSNSEVVENA 
200
LNHLSGISSN DLWTTLEDQT CIPKIEATVI QNHVSLKVQC EKKQGQLLKG 
250
IISLEKLKLT VLHLNITTSS HSSVSYSFNL KMEDECDLES ADEITAAVHR 
300
IFDIPTI
350