fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G62090 PIF6, PIL2 PHYTOCHROME-INTERACTING FACTOR 6, phytochrome interacting factor 3-like 2 (.1.2.3)

>AT3G62090.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 556
HindIII A|AGCTT 266, 491
NcoI C|CATGG 138
StyI C|C[AT][AT]GG 138
XbaI T|CTAGA 438


Click here to view TAIR data

>AT3G62090.1 length:1041
ATGGAGCTTG TGTTTGAGAA TGGCCAGATT CTTGCAAAGG GCCAAAGATC 
50
CAACGTTTCT CTGCATAATC AACGTACCAA ATCGATCATG GATTTGTATG 
100
AGGCAGAGTA TAACGAGGAT TTCATGAAGA GTATCATCCA TGGTGGTGGT 
150
GGTGCCATCA CAAATCTCGG GGACACGCAG GTTGTTCCAC AAAGTCATGT 
200
TGCTGCTGCC CATGAAACAA ACATGTTGGA AAGCAATAAA CATGTTGACG 
250
ATTCTGAGAC TTTGAAAGCT TCTTCATCAA AGAGGATGAT GGTTGATTAT 
300
CATAACCGAA AGAAGATCAA GTTTATACCT CCTGATGAGC AATCCGTGGT 
350
TGCTGATAGG TCGTTCAAAT TGGGCTTTGA CACTTCCTCC GTAGGTTTCA 
400
CTGAAGACAG TGAAGGATCG ATGTATCTAA GCAGTAGTCT AGATGACGAG 
450
TCAGATGATG CGAGGCCACA AGTTCCTGCA AGAACAAGAA AAGCTTTGGT 
500
CAAAAGAAAA CGAAATGCAG AAGCGTATAA TTCACCTGAG AGAAATCAAA 
550
GAAATGATAT CAACAAGAAA ATGCGTACTT TGCAAAATCT ACTACCTAAC 
600
TCTCACAAGG ACGACAACGA ATCGATGTTG GATGAAGCAA TCAATTATAT 
650
GACAAACCTT CAACTTCAAG TTCAGATGAT GACGATGGGT AACAGATTTG 
700
TTACACCATC AATGATGATG CCTTTGGGGC CGAACTACTC TCAGATGGGT 
750
CTAGCAATGG GTGTGGGAAT GCAAATGGGC GAACAACAGT TTCTGCCTGC 
800
ACATGTTCTA GGAGCTGGCT TGCCTGGGAT TAATGATTCA GCAGATATGC 
850
TAAGGTTTCT TAACCATCCT GGACTAATGC CAATGCAAAA CTCTGCACCT 
900
TTCATTCCAA CGGAAAATTG TTCCCCACAA TCTGTCCCTC CATCGTGCGC 
950
TGCTTTCCCT AACCAAATAC CAAATCCCAA CTCTTTGTCA AATTTAGATG 
1000
GTGCAACCTT ACACAAGAAA TCAAGGAAAA CTAACAGATG A
1050

>AT3G62090.1 longest ORF length:346
MELVFENGQI LAKGQRSNVS LHNQRTKSIM DLYEAEYNED FMKSIIHGGG 
50
GAITNLGDTQ VVPQSHVAAA HETNMLESNK HVDDSETLKA SSSKRMMVDY 
100
HNRKKIKFIP PDEQSVVADR SFKLGFDTSS VGFTEDSEGS MYLSSSLDDE 
150
SDDARPQVPA RTRKALVKRK RNAEAYNSPE RNQRNDINKK MRTLQNLLPN 
200
SHKDDNESML DEAINYMTNL QLQVQMMTMG NRFVTPSMMM PLGPNYSQMG 
250
LAMGVGMQMG EQQFLPAHVL GAGLPGINDS ADMLRFLNHP GLMPMQNSAP 
300
FIPTENCSPQ SVPPSCAAFP NQIPNPNSLS NLDGATLHKK SRKTNR
350