fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G00050 bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

>AT4G00050.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
NcoI C|CATGG 413, 479, 890
SacI GAGCT|C 265
SalI G|TCGAC 177
SmaI CCC|GGG 383
StyI C|C[AT][AT]GG 413, 479, 890


Click here to view TAIR data

>AT4G00050.1 length:1200
ATGAGCCAAT GTGTTCCAAA CTGTCACATC GATGATACTC CGGCAGCAGC 
50
CACCACCACC GTCCGCTCCA CCACAGCCGC AGACATCCCC ATATTAGACT 
100
ACGAGGTAGC CGAGCTGACG TGGGAGAACG GGCAACTAGG CTTGCACGGC 
150
TTAGGTCCAC CGCGAGTGAC GGCTTCGTCG ACCAAGTACT CCACAGGCGC 
200
CGGTGGAACG TTGGAGTCGA TAGTGGACCA AGCTACTCGC CTCCCTAACC 
250
CTAAGCCCAC GGATGAGCTC GTCCCGTGGT TCCATCATCG CTCCTCCAGG 
300
GCCGCGATGG CAATGGACGC GCTTGTCCCT TGCTCCAACC TAGTACACGA 
350
GCAGCAGAGC AAGCCTGGTG GCGTTGGCTC CACCCGGGTG GGGTCATGTA 
400
GCGATGGTCG TACCATGGGC GGTGGAAAAC GAGCAAGAGT GGCACCGGAG 
450
TGGAGCGGCG GCGGGAGTCA GCGGCTGACC ATGGACACTT ACGACGTAGG 
500
TTTCACCTCA ACATCAATGG GCTCGCACGA TAACACAATC GACGATCATG 
550
ACTCCGTCTG CCACAGCCGC CCACAGATGG AGGACGAAGA AGAGAAGAAA 
600
GCCGGAGGAA AATCATCAGT TTCAACCAAG AGAAGCAGAG CTGCTGCTAT 
650
TCATAACCAA TCCGAACGTA AGAGGAGAGA TAAAATCAAT CAAAGGATGA 
700
AGACTTTGCA AAAACTGGTT CCCAATTCCA GCAAGACGGA TAAAGCATCT 
750
ATGTTGGATG AAGTGATAGA GTATTTGAAG CAACTTCAAG CACAAGTGAG 
800
CATGATGAGC AGAATGAATA TGCCTTCTAT GATGCTTCCT ATGGCCATGC 
850
AGCAACAACA ACAACTACAA ATGTCTCTCA TGTCCAATCC CATGGGTTTA 
900
GGGATGGGCA TGGGGATGCC CGGTCTCGGT CTCCTCGACC TTAATTCTAT 
950
GAACCGAGCT GCTGCAAGCG CTCCTAATAT CCATGCCAAC ATGATGCCAA 
1000
ACCCATTTTT GCCCATGAAT TGTCCATCGT GGGATGCTTC TTCCAATGAC 
1050
TCTCGATTTC AGTCTCCTCT CATCCCCGAT CCTATGTCTG CCTTTCTTGC 
1100
ATGCTCTACT CAGCCAACGA CGATGGAAGC GTATAGCAGG ATGGCTACAT 
1150
TATATCAGCA AATGCAACAA CAACTTCCTC CTCCTTCGAA TCCAAAATGA 
1200

>AT4G00050.1 longest ORF length:399
MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG 
50
LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR 
100
AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE 
150
WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK 
200
AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS 
250
MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL 
300
GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND 
350
SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
400