|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT4G00120 | IND1, GT140, bHLH040, IND, EDA33 | INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) |
>AT4G00120.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HpaII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MseI, MslI, MspA1I, MspI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tsp45I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AccI | GT|[AC][TG]AC | 301 |
| AciI | C|CGC | 334 |
| AluI | AG|CT | 130, 160, 457, 541 |
| ApoI | Pu|AATTPy | 416 |
| AvaII | G|G[AT]CC | 320 |
| BanII | GPuGCPy|C | 542 |
| BbvCI | CC|TCAGC | 98 |
| BsaHI | GPu|CGPyC | 386 |
| BsaJI | C|CNNGG | 317 |
| BsiHKAI | G[AT]GC[AT]|C | 542 |
| BslI | CCNNNNN|NNGG | 317 |
| Bsp1286I | G[GAT]GC[CAT]|C | 542 |
| BssKI | |CCNGG | 435 |
| BstF5I | GGATGNN| | 256 |
| BstNI | CC|[AT]GG | 435 |
| BstYI | Pu|GATCPy | 61, 195, 410 |
| BtgI | C|CPuPyGG | 317 |
| DdeI | C|TNAG | 97, 325, 364, 532 |
| DpnI | GA-CH3|TC | 60, 137, 173, 194, 280, 359, 397, 409, 427 |
| DpnII | |GATC | 60, 137, 173, 194, 280, 359, 397, 409, 427 |
| DrdI | GACNNNN|NNGTC | 43 |
| EcoRI | G|AATTC | 416 |
| Fnu4HI | GC|NGC | 159, 293 |
| HinfI | G|ANTC | 36, 515 |
| Hpy188I | TCN|GA | 365, 412, 533 |
| Hpy99I | CG[AT]CG| | 356, 381, 387, 470 |
| HpyCH4III | ACN|GT | 318, 369 |
| HpyCH4IV | A|CGT | 342, 481 |
| HpyCH4V | TG|CA | 270, 291 |
| MboI | |GATC | 60, 137, 173, 194, 280, 359, 397, 409, 427 |
| MwoI | GCNNNNN|NNGC | 549 |
| NlaIII | CATG| | 85, 115, 187, 250, 277, 289, 463 |
| NlaIV | GGN|NCC | 93, 321 |
| PspGI | |CC[AT]GG | 435 |
| RsaI | GT|AC | 238, 274 |
| SacI | GAGCT|C | 542 |
| Sau3AI | |GATC | 60, 137, 173, 194, 280, 359, 397, 409, 427 |
| Sau96I | G|GNCC | 320 |
| ScrFI | CC|NGG | 435 |
| SmlI | C|TPyPuAG | 421 |
| Taqƒ¿I | T|CGA | 306, 468 |
| TfiI | G|A[AT]TC | 515 |
| TseI | G|C[AT]GC | 159, 293 |
| Tsp509I | |AATT | 214, 415 |
Click here to view TAIR data
>AT4G00120.1 length:597
ATGGAAAATG GTATGTATAA AAAGAAAGGA GTGTGCGACT CTTGTGTCTC | 50 |
GTCCAAAAGC AGATCCAACC ACAGCCCCAA AAGAAGCATG ATGGAGCCTC | 100 |
AGCCTCACCA TCTCCTCATG GATTGGAACA AAGCTAATGA TCTTCTCACA | 150 |
CAAGAACACG CAGCTTTTCT CAATGATCCT CACCATCTCA TGTTAGATCC | 200 |
ACCTCCCGAA ACCCTAATTC ACTTGGACGA AGACGAAGAG TACGATGAAG | 250 |
ACATGGATGC GATGAAGGAG ATGCAGTACA TGATCGCCGT CATGCAGCCC | 300 |
GTAGACATCG ACCCTGCCAC GGTCCCTAAG CCGAACCGCC GTAACGTAAG | 350 |
GATAAGCGAC GATCCTCAGA CGGTGGTTGC TCGTCGGCGT CGGGAAAGGA | 400 |
TCAGCGAGAA GATCCGAATT CTCAAGAGGA TCGTGCCTGG TGGTGCGAAG | 450 |
ATGGACACAG CTTCCATGCT CGACGAAGCC ATACGTTACA CCAAGTTCTT | 500 |
GAAACGGCAG GTGAGGATTC TTCAGCCTCA CTCTCAGATT GGAGCTCCTA | 550 |
TGGCTAACCC CTCTTACCTT TGTTATTACC ACAACTCCCA ACCCTGA | 600 |
>AT4G00120.1 longest ORF length:198
MENGMYKKKG VCDSCVSSKS RSNHSPKRSM MEPQPHHLLM DWNKANDLLT | 50 |
QEHAAFLNDP HHLMLDPPPE TLIHLDEDEE YDEDMDAMKE MQYMIAVMQP | 100 |
VDIDPATVPK PNRRNVRISD DPQTVVARRR RERISEKIRI LKRIVPGGAK | 150 |
MDTASMLDEA IRYTKFLKRQ VRILQPHSQI GAPMANPSYL CYYHNSQP | 200 |