fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G00120 IND1, GT140, bHLH040, IND, EDA33 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

>AT4G00120.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 416
SacI GAGCT|C 542


Click here to view TAIR data

>AT4G00120.1 length:597
ATGGAAAATG GTATGTATAA AAAGAAAGGA GTGTGCGACT CTTGTGTCTC 
50
GTCCAAAAGC AGATCCAACC ACAGCCCCAA AAGAAGCATG ATGGAGCCTC 
100
AGCCTCACCA TCTCCTCATG GATTGGAACA AAGCTAATGA TCTTCTCACA 
150
CAAGAACACG CAGCTTTTCT CAATGATCCT CACCATCTCA TGTTAGATCC 
200
ACCTCCCGAA ACCCTAATTC ACTTGGACGA AGACGAAGAG TACGATGAAG 
250
ACATGGATGC GATGAAGGAG ATGCAGTACA TGATCGCCGT CATGCAGCCC 
300
GTAGACATCG ACCCTGCCAC GGTCCCTAAG CCGAACCGCC GTAACGTAAG 
350
GATAAGCGAC GATCCTCAGA CGGTGGTTGC TCGTCGGCGT CGGGAAAGGA 
400
TCAGCGAGAA GATCCGAATT CTCAAGAGGA TCGTGCCTGG TGGTGCGAAG 
450
ATGGACACAG CTTCCATGCT CGACGAAGCC ATACGTTACA CCAAGTTCTT 
500
GAAACGGCAG GTGAGGATTC TTCAGCCTCA CTCTCAGATT GGAGCTCCTA 
550
TGGCTAACCC CTCTTACCTT TGTTATTACC ACAACTCCCA ACCCTGA
600

>AT4G00120.1 longest ORF length:198
MENGMYKKKG VCDSCVSSKS RSNHSPKRSM MEPQPHHLLM DWNKANDLLT 
50
QEHAAFLNDP HHLMLDPPPE TLIHLDEDEE YDEDMDAMKE MQYMIAVMQP 
100
VDIDPATVPK PNRRNVRISD DPQTVVARRR RERISEKIRI LKRIVPGGAK 
150
MDTASMLDEA IRYTKFLKRQ VRILQPHSQI GAPMANPSYL CYYHNSQP
200