fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G00180 YAB3 YABBY3, Plant-specific transcription factor YABBY family protein (.1.2)

>AT4G00180.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 529
PvuII CAG|CTG 692
SacI GAGCT|C 203
StyI C|C[AT][AT]GG 231


Click here to view TAIR data

>AT4G00180.1 length:723
ATGTCGAGCA TGTCCATGTC GTCCTCCTCA GCTCCAGCTT TTCCACCGGA 
50
CCACTTCTCA TCTACGGACC AGCTCTGTTA CGTCCATTGC AGCTTCTGCG 
100
ACACTGTCCT TGCTGTGAGT GTTCCTCCGA GTAGTTTGTT CAAGACGGTG 
150
ACGGTCAGAT GCGGCCACTG TTCGAACCTT TTGTCGGTGA CCGTGAGCAT 
200
GAGAGCTCTT CTTCTTCCAT CCGTTTCCAA CCTTGGCCAT TCCTTTTTAC 
250
CTCCCCCTCC TCCTCCTCCT CCTCCAAATC TTTTGGAGGA AATGCGAAGC 
300
GGAGGGCAGA ATATAAACAT GAACATGATG ATGAGCCATC ACGCTTCAGC 
350
TCACCACCCG AACGAGCATT TGGTTATGGC GACTCGCAAC GGAAGATCAG 
400
TGGATCATCT ACAAGAGATG CCTCGGCCAC CACCAGCCAA TAGACCCCCA 
450
GAGAAGCGAC AAAGAGTACC ATCTGCATAC AACCGATTCA TCAAAGAGGA 
500
GATCCAACGT ATAAAGGCAG GCAACCCTGA TATCAGCCAC AGAGAAGCCT 
550
TCAGTGCTGC TGCCAAAAAC TGGGCTCATT TCCCTCACAT ACACTTTGGA 
600
CTCATGGCTG ACCATCCTCC CACGAAGAAG GCTAACGTGC GCCAACAGGA 
650
AGGAGAGGAT GGGATGATGG GAAGAGAAGG GTTTTACGGT TCAGCTGCCA 
700
ACGTTGGGGT GGCCCATAAC TAG
750

>AT4G00180.1 longest ORF length:240
MSSMSMSSSS APAFPPDHFS STDQLCYVHC SFCDTVLAVS VPPSSLFKTV 
50
TVRCGHCSNL LSVTVSMRAL LLPSVSNLGH SFLPPPPPPP PPNLLEEMRS 
100
GGQNINMNMM MSHHASAHHP NEHLVMATRN GRSVDHLQEM PRPPPANRPP 
150
EKRQRVPSAY NRFIKEEIQR IKAGNPDISH REAFSAAAKN WAHFPHIHFG 
200
LMADHPPTKK ANVRQQEGED GMMGREGFYG SAANVGVAHN 
250