fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G00200 AT hook motif DNA-binding family protein (.1)

>AT4G00200.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NheI, NotI, PacI, SacI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 477
NcoI C|CATGG 125
NdeI CA|TATG 64
PstI CTGCA|G 773
PvuII CAG|CTG 885
SalI G|TCGAC 949
StyI C|C[AT][AT]GG 125


Click here to view TAIR data

>AT4G00200.1 length:957
ATGGAAACAA GCGACAGAAT TAGCCCTGGT GGTGGTATAG GAGCAGAAGT 
50
TCCATCAGCG TATCATATGG CTCCGAGACC TTCAGATAGC CCTGCTAACC 
100
AGTTTATGGG GTTGTCTCTC CCTCCCATGG AAGCCCCAAT GCCTTCTTCA 
150
GGGGAAGCCT CAGGGAAGAA GAGGAGAGGC AGACCTCGTA AATATGAAGC 
200
TAATGGTGCT CCTTTGCCTT CTTCATCAGT TCCTCTTGTG AAGAAACGAG 
250
TAAGAGGCAA GCTCAATGGT TTTGATATGA AGAAGATGCA TAAGACCATT 
300
GGGTTCCATT CTTCTGGTGA AAGGTTTGGT GTTGGTGGTG GTGTTGGTGG 
350
TGGTGTTGGA TCAAATTTCA CGCCGCATGT AATCACAGTG AACACTGGTG 
400
AGGATATTAC TATGAGAATC ATCTCCTTTT CACAACAAGG ACCACGAGCT 
450
ATTTGTATCT TATCAGCAAA TGGAGTGATA TCAAACGTTA CTCTTCGCCA 
500
ACCCGATTCT TGCGGTGGTA CTCTCACCTA CGAGGGTCGG TTTGAGATAC 
550
TGTCTCTGTC TGGTTCATTC ATGGAAACAG AGAATCAAGG TTCAAAAGGT 
600
CGGTCTGGTG GCATGAGTGT ATCTTTGGCC GGTCCTGATG GTCGTGTTGT 
650
CGGTGGCGGT GTCGCTGGCC TGCTCATTGC CGCCACTCCT ATTCAGGTTG 
700
TTGTTGGCAG TTTTATAACG AGTGATCAAC AAGATCATCA GAAACCGAGG 
750
AAGCAAAGAG TCGAGCATGC CCCTGCAGCA GTCATGTCAG TGCCTCCTCC 
800
TCCTTCTCCT CCTCCTCCGG CGGCTTCTGT TTTCTCACCG ACAAACCCGG 
850
ACAGAGAGCA GCCGCCATCT TCATTCGGTA TCTCCAGCTG GACCAACGGA 
900
CAGGACATGC CGAGAAACTC AGCCACTGAC ATCAACATAT CTTTACCAGT 
950
CGACTGA
1000

>AT4G00200.1 longest ORF length:318
METSDRISPG GGIGAEVPSA YHMAPRPSDS PANQFMGLSL PPMEAPMPSS 
50
GEASGKKRRG RPRKYEANGA PLPSSSVPLV KKRVRGKLNG FDMKKMHKTI 
100
GFHSSGERFG VGGGVGGGVG SNFTPHVITV NTGEDITMRI ISFSQQGPRA 
150
ICILSANGVI SNVTLRQPDS CGGTLTYEGR FEILSLSGSF METENQGSKG 
200
RSGGMSVSLA GPDGRVVGGG VAGLLIAATP IQVVVGSFIT SDQQDHQKPR 
250
KQRVEHAPAA VMSVPPPPSP PPPAASVFSP TNPDREQPPS SFGISSWTNG 
300
QDMPRNSATD INISLPVD
350