fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G00950 MEE47 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1)

>AT4G00950.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, Hpy188I, Hpy99I, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tsp45I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 613
AluI AG|CT 4, 121, 137, 255, 758
AvaII G|G[AT]CC 336
BanII GPuGCPy|C 465
BglII A|GATCT 734
BsaJI C|CNNGG 265, 847
BsaWI [AT]|CCGG[AT] 54
BslI CCNNNNN|NNGG 139
Bsp1286I G[GAT]GC[CAT]|C 465
BspDI AT|CGAT 436
BssKI |CCNGG 153
BstF5I GGATGNN| 366, 387
BstNI CC|[AT]GG 153
BstYI Pu|GATCPy 734
BtgI C|CPuPyGG 847
Cac8I GCN|NGC 158, 774
ClaI AT|CGAT 436
DdeI C|TNAG 7, 251, 469
DpnI GA-CH3|TC 294, 733
DpnII |GATC 294, 733
EcoRV GAT|ATC 433
Fnu4HI GC|NGC 473, 703, 712, 757
HinfI G|ANTC 369
HpaII C|CGG 53
HpyCH4III ACN|GT 39, 109, 324, 631, 867
HpyCH4V TG|CA 701, 775, 823
MboI |GATC 294, 733
MseI T|TAA 209
MspI C|CGG 53
MwoI GCNNNNN|NNGC 158, 709
NcoI C|CATGG 847
NlaIII CATG| 346, 846
NlaIV GGN|NCC 843
PspGI |CC[AT]GG 153
Sau3AI |GATC 294, 733
Sau96I G|GNCC 336
ScrFI CC|NGG 153
SfcI C|TPuPyAG 611, 866
SmlI C|TPyPuAG 486, 738
StyI C|C[AT][AT]GG 265, 847
Taqƒ¿I T|CGA 435
TfiI G|A[AT]TC 369
TseI G|C[AT]GC 473, 703, 712, 757
Tsp509I |AATT 103


Click here to view TAIR data

>AT4G00950.1 length:876
ATGGAAGCTG AGAAAGAAAC AGAACAAGAA GGAAACTTGA CAGTAATGAA 
50
ACTTCCGGTG TTACCAACTA AACCCAACAC TCACAGCCAC TCTATGTCAT 
100
CACCAATTCA CAGTTCCATA TCAGCTTCAG TTCCCTTTAG CTGGGAAGAA 
150
GAGCCTGGCA AGCCCAAGCA ACACTCTACT TCTTCTTCCT CCTCTTCCTC 
200
TTCCTCACCA TTAACTTCTT ATTCTTCATC TCCTTTTGAA ACTCACAAGT 
250
CCTTAGAGCT ACCACCAAGG CTTCACTTAC TTGAAAAAGA TGGAGGATCA 
300
GTAACCAAAC TTCACTCGCC TATAACAGTC TTTGATGGAC CTTATAGCAT 
350
GACGACATCA AAAAGGATGG ATTCACCTTC CTTTAGGATG ATGGTGAAAG 
400
GTAGTGCTGA TTGTTATGGG TCTTTCAGGA GTGATATCGA TGGTGATTTA 
450
GAGGATTTGG AAGTGGGCTC TAAGCAGCAG GAGAACTTGA GTAGTGGCTC 
500
TTTGGCTGTT GTGAAGAAGA GAGGGAGATT AGGGTTTTTT GGGTTTAGGA 
550
GGAGGAGAGC ATTGAAAGGG AAAACAGAGT TTGGTAGAGG TAGTTATGTG 
600
TTCCCATCTT CTGTAGACAG AGAGAGTGAA TACAGTAGAA AGGAAGAGGA 
650
AGAAGAAAAA GAAGACAAAA GGTTTGGTTA TGATGATACT GATGGTATTA 
700
GTTGCAGCCA AAGCAGCAGG TTTTGTGATG TGAAGATCTC AAGCATTAGT 
750
AGAACAGGCA GCTTCTCTAC TCTGCCTGCA CCACCTTCTT CTTCTTCAAA 
800
GTCTCACTTT TGGACGAATG TGTATGCAGG ACTAAAGCAA GTGGTTCCAT 
850
GGAAGAGCAA GAAGACTACA GTTTGA
900

>AT4G00950.1 longest ORF length:291
MEAEKETEQE GNLTVMKLPV LPTKPNTHSH SMSSPIHSSI SASVPFSWEE 
50
EPGKPKQHST SSSSSSSSSP LTSYSSSPFE THKSLELPPR LHLLEKDGGS 
100
VTKLHSPITV FDGPYSMTTS KRMDSPSFRM MVKGSADCYG SFRSDIDGDL 
150
EDLEVGSKQQ ENLSSGSLAV VKKRGRLGFF GFRRRRALKG KTEFGRGSYV 
200
FPSSVDRESE YSRKEEEEEK EDKRFGYDDT DGISCSQSSR FCDVKISSIS 
250
RTGSFSTLPA PPSSSSKSHF WTNVYAGLKQ VVPWKSKKTT V
300