Locus |
Common name |
Short description |
AT4G00950 |
MEE47 |
maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) |
>AT4G00950.1 CDS map
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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, Hpy188I, Hpy99I, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tsp45I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AccI
| GT|[AC][TG]AC |
613 |
AluI
| AG|CT |
4, 121, 137, 255, 758 |
AvaII
| G|G[AT]CC |
336 |
BanII
| GPuGCPy|C |
465 |
BglII
| A|GATCT |
734 |
BsaJI
| C|CNNGG |
265, 847 |
BsaWI
| [AT]|CCGG[AT] |
54 |
BslI
| CCNNNNN|NNGG |
139 |
Bsp1286I
| G[GAT]GC[CAT]|C |
465 |
BspDI
| AT|CGAT |
436 |
BssKI
| |CCNGG |
153 |
BstF5I
| GGATGNN| |
366, 387 |
BstNI
| CC|[AT]GG |
153 |
BstYI
| Pu|GATCPy |
734 |
BtgI
| C|CPuPyGG |
847 |
Cac8I
| GCN|NGC |
158, 774 |
ClaI
| AT|CGAT |
436 |
DdeI
| C|TNAG |
7, 251, 469 |
DpnI
| GA-CH3|TC |
294, 733 |
DpnII
| |GATC |
294, 733 |
EcoRV
| GAT|ATC |
433 |
Fnu4HI
| GC|NGC |
473, 703, 712, 757 |
HinfI
| G|ANTC |
369 |
HpaII
| C|CGG |
53 |
HpyCH4III
| ACN|GT |
39, 109, 324, 631, 867 |
HpyCH4V
| TG|CA |
701, 775, 823 |
MboI
| |GATC |
294, 733 |
MseI
| T|TAA |
209 |
MspI
| C|CGG |
53 |
MwoI
| GCNNNNN|NNGC |
158, 709 |
NcoI
| C|CATGG |
847 |
NlaIII
| CATG| |
346, 846 |
NlaIV
| GGN|NCC |
843 |
PspGI
| |CC[AT]GG |
153 |
Sau3AI
| |GATC |
294, 733 |
Sau96I
| G|GNCC |
336 |
ScrFI
| CC|NGG |
153 |
SfcI
| C|TPuPyAG |
611, 866 |
SmlI
| C|TPyPuAG |
486, 738 |
StyI
| C|C[AT][AT]GG |
265, 847 |
Taqƒ¿I
| T|CGA |
435 |
TfiI
| G|A[AT]TC |
369 |
TseI
| G|C[AT]GC |
473, 703, 712, 757 |
Tsp509I
| |AATT |
103 |
Click here to view TAIR data
>AT4G00950.1 length:876
ATGGAAGCTG AGAAAGAAAC AGAACAAGAA GGAAACTTGA CAGTAATGAA | 50 |
ACTTCCGGTG TTACCAACTA AACCCAACAC TCACAGCCAC TCTATGTCAT | 100 |
CACCAATTCA CAGTTCCATA TCAGCTTCAG TTCCCTTTAG CTGGGAAGAA | 150 |
GAGCCTGGCA AGCCCAAGCA ACACTCTACT TCTTCTTCCT CCTCTTCCTC | 200 |
TTCCTCACCA TTAACTTCTT ATTCTTCATC TCCTTTTGAA ACTCACAAGT | 250 |
CCTTAGAGCT ACCACCAAGG CTTCACTTAC TTGAAAAAGA TGGAGGATCA | 300 |
GTAACCAAAC TTCACTCGCC TATAACAGTC TTTGATGGAC CTTATAGCAT | 350 |
GACGACATCA AAAAGGATGG ATTCACCTTC CTTTAGGATG ATGGTGAAAG | 400 |
GTAGTGCTGA TTGTTATGGG TCTTTCAGGA GTGATATCGA TGGTGATTTA | 450 |
GAGGATTTGG AAGTGGGCTC TAAGCAGCAG GAGAACTTGA GTAGTGGCTC | 500 |
TTTGGCTGTT GTGAAGAAGA GAGGGAGATT AGGGTTTTTT GGGTTTAGGA | 550 |
GGAGGAGAGC ATTGAAAGGG AAAACAGAGT TTGGTAGAGG TAGTTATGTG | 600 |
TTCCCATCTT CTGTAGACAG AGAGAGTGAA TACAGTAGAA AGGAAGAGGA | 650 |
AGAAGAAAAA GAAGACAAAA GGTTTGGTTA TGATGATACT GATGGTATTA | 700 |
GTTGCAGCCA AAGCAGCAGG TTTTGTGATG TGAAGATCTC AAGCATTAGT | 750 |
AGAACAGGCA GCTTCTCTAC TCTGCCTGCA CCACCTTCTT CTTCTTCAAA | 800 |
GTCTCACTTT TGGACGAATG TGTATGCAGG ACTAAAGCAA GTGGTTCCAT | 850 |
GGAAGAGCAA GAAGACTACA GTTTGA | 900 |
>AT4G00950.1 longest ORF length:291
MEAEKETEQE GNLTVMKLPV LPTKPNTHSH SMSSPIHSSI SASVPFSWEE | 50 |
EPGKPKQHST SSSSSSSSSP LTSYSSSPFE THKSLELPPR LHLLEKDGGS | 100 |
VTKLHSPITV FDGPYSMTTS KRMDSPSFRM MVKGSADCYG SFRSDIDGDL | 150 |
EDLEVGSKQQ ENLSSGSLAV VKKRGRLGFF GFRRRRALKG KTEFGRGSYV | 200 |
FPSSVDRESE YSRKEEEEEK EDKRFGYDDT DGISCSQSSR FCDVKISSIS | 250 |
RTGSFSTLPA PPSSSSKSHF WTNVYAGLKQ VVPWKSKKTT V | 300 |
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