fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G01280 Homeodomain-like superfamily protein (.1.2)

>AT4G01280.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 129, 786
EcoRV GAT|ATC 876
HindIII A|AGCTT 896
PstI CTGCA|G 618
XbaI T|CTAGA 210


Click here to view TAIR data

>AT4G01280.1 length:909
ATGGTGTCCG TAAACCCTAG ACCTAAGGGT TTTCCAGTTT TCGATTCCTC 
50
GAATATGAGT TTACCAAGCT CCGATGGATT TGGTTCGATT CCGGCCACGG 
100
GACGGACCAG TACGGTGTCG TTTTCTGAGG ATCCGACGAC GAAGATTCGG 
150
AAGCCGTACA CAATCAAGAA GTCGAGAGAG AATTGGACAG ATCAAGAGCA 
200
CGATAAATTT CTAGAAGCTC TTCACTTATT CGATAGGGAT TGGAAGAAAA 
250
TAGAAGCCTT TGTTGGATCA AAAACAGTAG TTCAGATACG AAGCCACGCT 
300
CAGAAATACT TTCTCAAAGT TCAGAAGAGT GGTGCTAACG AACATCTTCC 
350
ACCTCCTCGA CCTAAGAGGA AAGCGAGTCA TCCTTATCCT ATAAAGGCTC 
400
CTAAAAATGT TGCTTATACC TCTCTCCCGT CTTCGAGTAC ATTACCGTTG 
450
CTTGAGCCTG GTTATTTGTA TAGCTCTGAT TCGAAGTCAT TGATGGGAAA 
500
CCAGGCTGTT TGTGCATCTA CCTCTTCTTC GTGGAATCAT GAATCGACAA 
550
ATCTGCCAAA ACCGGTGATT GAAGAGGAAC CGGGAGTCTC GGCCACGGCT 
600
CCTCTCCCAA ATAATCGCTG CAGACAGGAA GATACAGAGA GGGTACGAGC 
650
AGTGACAAAG CCAAATAACG AAGAAAGTTG TGAAAAGCCA CATAGAGTGA 
700
TGCCGAATTT TGCTGAAGTT TACAGCTTCA TTGGAAGTGT CTTCGATCCC 
750
AACACATCAG GCCACCTCCA GAGATTAAAG CAGATGGATC CAATAAATAT 
800
GGAAACGGTT CTTTTACTGA TGCAAAACCT GTCTGTAAAT CTGACAAGTC 
850
CCGAGTTTGC AGAGCAAAGG AGGTTGATAT CATCATACAG CGCTAAAGCT 
900
TTGAAATAG
950

>AT4G01280.1 longest ORF length:302
MVSVNPRPKG FPVFDSSNMS LPSSDGFGSI PATGRTSTVS FSEDPTTKIR 
50
KPYTIKKSRE NWTDQEHDKF LEALHLFDRD WKKIEAFVGS KTVVQIRSHA 
100
QKYFLKVQKS GANEHLPPPR PKRKASHPYP IKAPKNVAYT SLPSSSTLPL 
150
LEPGYLYSSD SKSLMGNQAV CASTSSSWNH ESTNLPKPVI EEEPGVSATA 
200
PLPNNRCRQE DTERVRAVTK PNNEESCEKP HRVMPNFAEV YSFIGSVFDP 
250
NTSGHLQRLK QMDPINMETV LLLMQNLSVN LTSPEFAEQR RLISSYSAKA 
300
LK
350