fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G01280 Homeodomain-like superfamily protein (.1.2)

>AT4G01280.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 129, 789
EcoRV GAT|ATC 879
HindIII A|AGCTT 899
PstI CTGCA|G 621
XbaI T|CTAGA 210


Click here to view TAIR data

>AT4G01280.2 length:912
ATGGTGTCCG TAAACCCTAG ACCTAAGGGT TTTCCAGTTT TCGATTCCTC 
50
GAATATGAGT TTACCAAGCT CCGATGGATT TGGTTCGATT CCGGCCACGG 
100
GACGGACCAG TACGGTGTCG TTTTCTGAGG ATCCGACGAC GAAGATTCGG 
150
AAGCCGTACA CAATCAAGAA GTCGAGAGAG AATTGGACAG ATCAAGAGCA 
200
CGATAAATTT CTAGAAGCTC TTCACTTATT CGATAGGGAT TGGAAGAAAA 
250
TAGAAGCCTT TGTTGGATCA AAAACAGTAG TTCAGATACG AAGCCACGCT 
300
CAGAAATACT TTCTCAAAGT TCAGAAGAGT GGTGCTAACG AACATCTTCC 
350
ACCTCCTCGA CCTAAGAGGA AAGCGAGTCA TCCTTATCCT ATAAAGGCTC 
400
CTAAAAATGT TGCTTATACC TCTCTCCCGT CTTCGAGTAC ATTACCGTTG 
450
CTTGAGCCTG GTTATTTGTA TAGCTCTGAT TCGAAGTCAT TGATGGGAAA 
500
CCAGGCTGTT TGTGCATCTA CCTCTTCTTC GTGGAATCAT GAATCGACAA 
550
ATCTGCCAAA ACCGGTGATT GAAGTAGAGG AACCGGGAGT CTCGGCCACG 
600
GCTCCTCTCC CAAATAATCG CTGCAGACAG GAAGATACAG AGAGGGTACG 
650
AGCAGTGACA AAGCCAAATA ACGAAGAAAG TTGTGAAAAG CCACATAGAG 
700
TGATGCCGAA TTTTGCTGAA GTTTACAGCT TCATTGGAAG TGTCTTCGAT 
750
CCCAACACAT CAGGCCACCT CCAGAGATTA AAGCAGATGG ATCCAATAAA 
800
TATGGAAACG GTTCTTTTAC TGATGCAAAA CCTGTCTGTA AATCTGACAA 
850
GTCCCGAGTT TGCAGAGCAA AGGAGGTTGA TATCATCATA CAGCGCTAAA 
900
GCTTTGAAAT AG
950

>AT4G01280.2 longest ORF length:303
MVSVNPRPKG FPVFDSSNMS LPSSDGFGSI PATGRTSTVS FSEDPTTKIR 
50
KPYTIKKSRE NWTDQEHDKF LEALHLFDRD WKKIEAFVGS KTVVQIRSHA 
100
QKYFLKVQKS GANEHLPPPR PKRKASHPYP IKAPKNVAYT SLPSSSTLPL 
150
LEPGYLYSSD SKSLMGNQAV CASTSSSWNH ESTNLPKPVI EVEEPGVSAT 
200
APLPNNRCRQ EDTERVRAVT KPNNEESCEK PHRVMPNFAE VYSFIGSVFD 
250
PNTSGHLQRL KQMDPINMET VLLLMQNLSV NLTSPEFAEQ RRLISSYSAK 
300
ALK
350