|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT4G02560 | LD | luminidependens, Homeodomain-like superfamily protein (.1.2) |
>AT4G02560.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AclI, AfeI, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, AscI, AseI, AvrII, BaeI, BalI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrGI, BssHII, BssSI, BstEII, BstXI, BstZ17I, BtrI, BtsI, DraI, DraIII, DrdI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, HaeII, HgaI, HincII, HindIII, HpaI, HphI, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MlyI, MnlI, MscI, MslI, , NarI, NdeI, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SspI, StuI, SwaI, Tth111I, XbaI, XmaI
| Name | Recognition sequence | Cut positions |
| AccII(FnuDII) | CG|CG | 4 |
| AccIII(BspMII) | T|CCGGA | 432, 489 |
| AciI | C|CGC | 1241, 1276, 1803 |
| AflII | C|TTAAG | 2098 |
| AflIII | A|CPuPyGT | 5 |
| AluI | AG|CT | 32, 54, 99, 506, 739, 940, 1225, 1453, 1537, 1639, 2086, 2213, 2370, 2769 |
| ApaLI | G|TGCAC | 2195 |
| ApoI | Pu|AATTPy | 331, 1955 |
| AvaI | C|PyCGPuG | 284, 2077 |
| AvaII | G|G[AT]CC | 916, 1107, 1530, 1557, 1584, 1611 |
| BamHI | G|GATCC | 1353 |
| BanII | GPuGCPy|C | 33 |
| BfaI | C|TAG | 744, 1683, 2355 |
| BglII | A|GATCT | 2109 |
| BsaBI | GATNN|NNATC | 25, 2733 |
| BsaJI | C|CNNGG | 320, 1406, 1424, 1912, 2694 |
| BsaWI | [AT]|CCGG[AT] | 432, 489 |
| BsiEI | CGPuPy|CG | 1619 |
| BsiHKAI | G[AT]GC[AT]|C | 33, 2195 |
| BslI | CCNNNNN|NNGG | 1500, 1527, 1554, 1581, 1608, 2162 |
| BsoBI | C|PyCGPuG | 284, 2077 |
| Bsp1286I | G[GAT]GC[CAT]|C | 33, 1319, 2195 |
| BspDI | AT|CGAT | 94 |
| BspEI | T|CCGGA | 432, 489 |
| BsrDI | GCAATGNN| | 125, 2393 |
| BsrFI | Pu|CCGGPy | 136, 1850, 2152 |
| BsrI | ACTGGN| | 2191 |
| BssKI | |CCNGG | 320, 635, 1215, 1631, 1770, 2280, 2724 |
| BstAPI | GCANNNN|NTGC | 74 |
| BstBI | TT|CGAA | 1380 |
| BstF5I | GGATGNN| | 2294 |
| BstNI | CC|[AT]GG | 320, 635, 1215, 1770, 2280, 2724 |
| BstUI | CG|CG | 4 |
| BstYI | Pu|GATCPy | 1353, 2109 |
| Bsu36I | CC|TNAGG | 221 |
| BtgI | C|CPuPyGG | 1912 |
| Cac8I | GCN|NGC | 408, 1317, 2152 |
| Cfr10I | [AG]|CCGG[TC] | 136, 1850, 2152 |
| ClaI | AT|CGAT | 94 |
| DdeI | C|TNAG | 220, 1053, 1396, 1456, 2055 |
| DpnI | GA-CH3|TC | 91, 95, 655, 685, 1352, 2072, 2108, 2358, 2452 |
| DpnII | |GATC | 91, 95, 655, 685, 1352, 2072, 2108, 2358, 2452 |
| EaeI | Py|GGCCPu | 199, 1619, 2154 |
| EagI | C|GGCCG | 1619 |
| EcoRV | GAT|ATC | 873 |
| Fnu4HI | GC|NGC | 165, 197, 608, 741, 1227, 1276, 1803, 2025, 2034, 2088 |
| FspI | TGC|GCA | 120, 153 |
| HaeIII | GG|CC | 198, 632, 1217, 1618, 2153 |
| HhaI | GCG|C | 119, 152 |
| HinP1I | G|CGC | 119, 152 |
| HinfI | G|ANTC | 42, 63, 215, 279, 570, 978, 986, 1095, 1137, 1238, 1377, 1428, 2001, 2309, 2315, 2618, 2627, 2733, 2741, 2814 |
| HpaII | C|CGG | 135, 431, 488, 1631, 1849, 2151 |
| Hpy188I | TCN|GA | 573, 876, 998, 1074, 1301, 1442, 1835, 2312, 2630 |
| Hpy99I | CG[AT]CG| | 113 |
| HpyCH4III | ACN|GT | 312, 525, 964, 1115, 1248, 1342, 1485, 1892, 1939, 2443, 2635 |
| HpyCH4V | TG|CA | 125, 660, 1129, 1329, 1736, 2119, 2194, 2347, 2388, 2493, 2563, 2665 |
| MboI | |GATC | 91, 95, 655, 685, 1352, 2072, 2108, 2358, 2452 |
| MfeI | C|AATTG | 991 |
| MluI | A|CGCGT | 5 |
| MseI | T|TAA | 47, 141, 183, 228, 255, 731, 849, 1650, 1985, 2097, 2184, 2772, 2857 |
| MspA1I | C[AC]G|C[GT]G | 1538, 1805 |
| MspI | C|CGG | 135, 431, 488, 1631, 1849, 2151 |
| MwoI | GCNNNNN|NNGC | 74, 171, 249, 2031, 2436 |
| N.BstNBI | GAGTCNNNN|N | 47, 991, 1243, 2623, 2746 |
| NaeI | GCC|GGC | 2152 |
| NciI | CC|[CG]GG | 1631 |
| NcoI | C|CATGG | 1912 |
| NgoMIV | G|CCGGC | 2152 |
| NlaIII | CATG| | 407, 455, 495, 658, 726, 1021, 1153, 1760, 1911, 2426, 2610, 2710, 2736, 2776, 2810 |
| NlaIV | GGN|NCC | 1107, 1353, 1992, 2574, 2765, 2837 |
| NspI | PuCATG|Py | 408, 496, 1154, 1761, 2427 |
| PaeR7I | C|TCGAG | 2077 |
| PflMI | CCANNNN|NTGG | 2162 |
| PspGI | |CC[AT]GG | 320, 635, 1215, 1770, 2280, 2724 |
| PstI | CTGCA|G | 1130, 2348 |
| PvuII | CAG|CTG | 1538 |
| RsaI | GT|AC | 1196, 1475, 1634, 1763, 2343, 2364, 2598, 2707 |
| SacI | GAGCT|C | 33 |
| Sau3AI | |GATC | 91, 95, 655, 685, 1352, 2072, 2108, 2358, 2452 |
| Sau96I | G|GNCC | 916, 1107, 1530, 1557, 1584, 1611 |
| ScrFI | CC|NGG | 320, 635, 1215, 1631, 1770, 2280, 2724 |
| SfcI | C|TPuPyAG | 867, 1130, 2348 |
| SmlI | C|TPyPuAG | 1729, 2077, 2098, 2205 |
| SphI | GCATG|C | 408 |
| StyI | C|C[AT][AT]GG | 1406, 1424, 1912, 2694 |
| Taqƒ¿I | T|CGA | 93, 325, 1270, 1379, 1481, 2076, 2241, 2450, 2603 |
| TfiI | G|A[AT]TC | 63, 215, 279, 570, 978, 1095, 1137, 1377, 1428, 2001, 2309, 2315, 2733, 2814 |
| TliI | C|TCGAG | 2077 |
| TseI | G|C[AT]GC | 165, 608, 741, 1227, 2025, 2034, 2088 |
| Tsp45I | |GT[CG]AC | 1100 |
| Tsp509I | |AATT | 187, 253, 330, 973, 990, 1624, 1648, 1733, 1954, 2020, 2144, 2513 |
| TspRI | NNCA[CG]TGNN| | 528 |
| XcmI | CCANNNNN|NNNNTGG | 1230 |
| XhoI | C|TCGAG | 2077 |
| XmnI | GAANN|NNTTC | 467, 551, 1049, 2309 |
Click here to view TAIR data
>AT4G02560.1 length:2862
ATGGACGCGT TCAAGGAGGA GATAGAAATC GGGAGCTCGG TGGAGTCTTT | 50 |
AATGGAGCTA TTGGATTCGC AGAAGGTGCT TTTTCATAGC CAGATCGATC | 100 |
AGCTCCAAGA TGTCGTCGTT GCGCAATGCA AACTTACCGG CGTTAATCCC | 150 |
CTTGCGCAAG AAATGGCTGC TGGTGCTTTG TCCATTAAAA TTGGAAAGCG | 200 |
GCCAAGAGAC TTGTTGAATC CTAAGGCTGT TAAGTATCTA CAAGCAGTTT | 250 |
TCGCAATTAA AGATGCTATT AGTAAGAGGG AATCTCGGGA GATAAGTGCT | 300 |
TTATTTGGCA TCACAGTCGC CCAGGTTCGA GAATTTTTTG TTACTCAAAA | 350 |
GACAAGAGTG AGGAAACAGG TGAGGCTTTC AAGGGAGAAA GTAGTTATGT | 400 |
CCAATACGCA TGCTTTACAA GATGATGGTG TTCCGGAAAA TAACAATGCC | 450 |
ACAAATCATG TTGAACCCGT TCCCTTGAAC TCTATACATC CGGAGGCATG | 500 |
TTCTATAAGC TGGGGTGAAG GTGAAACAGT GGCACTTATT CCACCTGAAG | 550 |
ATATTCCACC TGACATCAGC GATTCAGACA AATACTTTGT TGAGAATATA | 600 |
TTTTCTCTGC TGCGTAAAGA GGAAACATTT TCAGGCCAGG TGAAACTAAT | 650 |
GGAGTGGATC ATGCAGATAC AAGATGCTTC TGTGCTGATC TGGTTTTTAT | 700 |
CAAAAGGAGG GGTTTTGATA CTTACAACAT GGTTAAGTCA AGCTGCTAGT | 750 |
GAAGAGCAAA CAAGTGTCTT ACTTCTTATC CTGAAGGTTC TTTGTCATTT | 800 |
ACCTCTCCAC AAAGCATCTC CTGAAAATAT GTCTGCCATA TTACAAAGCG | 850 |
TTAATGGACT TCGTTTCTAT AGGATATCAG ACATATCAAA CAGGGCAAAA | 900 |
GGTTTGTTAT CAAGGTGGAC CAAGTTATTT GCGAAAATCC AAGCTATGAA | 950 |
GAAACAAAAT CGTAACAGTT CGCAAATTGA TTCGCAGAGT CAATTGCTTC | 1000 |
TGAAACAGAG TATTGCTGAA ATCATGGGTG ATAGTAGCAA TCCTGAAGAT | 1050 |
ATTCTTAGTC TCTCAAATGG AAAGTCAGAG AATGTCAGGA GGATTGAATC | 1100 |
GTCACAGGGT CCAAAACTGT TGCTTACTTC TGCAGATGAT TCCACCAAGA | 1150 |
AACACATGCT TGGTTCAAAT CCATCGTATA ACAAAGAACG CAGGAAAGTA | 1200 |
CAGATGGTGG AACAACCAGG CCAAAAAGCT GCTGGAAAGA GTCCGCAGAC | 1250 |
AGTAAGAATA GGAACTTCAG GTCGAAGCCG CCCAATGTCT GCTGATGATA | 1300 |
TTCAGAAAGC AAAGATGCGT GCCCTTTATA TGCAGAGCAA GAACAGTAAA | 1350 |
AAGGATCCTT TACCAAGTGC CATTGGTGAT TCGAAAATCG TTGCTCCTGA | 1400 |
GAAGCCCTTG GCTCTTCATT CAGCCAAGGA TTCTCCACCT ATTCAGAACA | 1450 |
ATGAAGCTAA GACTGAAGAC ACACCTGTAC TCTCGACTGT TCAGCCCGTC | 1500 |
AATGGATTTT CAACTATTCA GCCCGTCAAT GGACCTTCAG CTGTTCAGCC | 1550 |
CGTCAATGGA CCTTTGGCTG TTCAGCCTGT CAATGGACCT TCGGCTCTTC | 1600 |
AGCCCGTCAA TGGACCTTCG GCCGTAATTG TCCCGGTACA AGCTGATGAA | 1650 |
ATTAAAAAAC CTTCAACACC TCCTAAAAGC ATTTCTAGTA AGGTGGGAGT | 1700 |
TATGATGAAA ATGAGTTCAC AAACTATTCT CAAGAATTGC AAGAGAAAAC | 1750 |
AGATTGATTG GCATGTACCA CCAGGAATGG AACTTGACGA ACTCTGGAGA | 1800 |
GTAGCCGCTG GTGGTAATAG CAAGGAGGCT GATGTTCAGA GAAACAGAAA | 1850 |
CCGGCGAGAA AGAGAAACAA CATATCAGTC TCTTCAAACT ATACCGTTGA | 1900 |
ACCCTAAAGA ACCATGGGAT AGGGAAATGG ACTATGATGA CAGTTTGACC | 1950 |
CCTGAAATTC CATCTCAACA GCCACCAGAA GAAAGTTTAA CGGAACCACA | 2000 |
GGATTCACTT GATGAACGAA GAATTGCTGC TGGTGCTGCC ACAACCTCTT | 2050 |
CATCTCTAAG CAGTCCTGAA CCTGATCTCG AGTTATTAGC TGCGTTACTT | 2100 |
AAGAACCCAG ATCTTGTTTA TGCACTAACT TCGGGAAAAC CCAGTAATTT | 2150 |
AGCCGGCCAA GATATGGTAA AACTGCTTGA TGTGATTAAG ACTGGTGCAC | 2200 |
CAAACTCAAG CAGTAGCTCA AATAAACAGG TTGAAGAAAG GGTCGAAGTT | 2250 |
TCCCTTCCAT CTCCCACTCC ATCAACTAAT CCTGGAATGA GTGGATGGGG | 2300 |
ACAAGAAGGG ATTCGGAATC CATTTTCAAG GCAAAACCAA GTTGGTACTG | 2350 |
CAGTTGCTAG ATCGGGTACA CAGCTTCGTG TTGGTTCAAT GCAATGGCAT | 2400 |
CAAACAAATG AACAATCAAT CCCACGACAT GCTCCATCAG CATACAGTAA | 2450 |
CTCGATCACA TTGGCTCACA CAGAAAGAGA ACAGCAACAA TATATGCAAC | 2500 |
CAAAACTTCA TCACAATTTA CATTTTCAAC AACAACAACA ACAACCAATC | 2550 |
TCAACAACCT CGTATGCAGT TAGGGAACCA GTAGGACAAA TGGGAACAGG | 2600 |
TACATCGAGT TCATGGAGGA GTCAGCAGAG TCAGAACAGT TACTACTCAC | 2650 |
ATCAAGAAAA CGAGATTGCA TCGGCTTCAC AAGTTACTTC ATACCAAGGG | 2700 |
AATAGCCAGT ACATGAGTAG CAATCCAGGA TATGAATCAT GGAGTCCTGA | 2750 |
TAATAGCCCA AGTAGGAACC AGCTTAACAT GAGGGGACAA CAACAACAAG | 2800 |
CATCAAGGAA ACATGATTCT TCTACTCATC CATATTGGAA CCAAAACAAA | 2850 |
AGATGGCGTT AA | 2900 |
>AT4G02560.1 longest ORF length:953
MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP | 50 |
LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA | 100 |
LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA | 150 |
TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI | 200 |
FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS | 250 |
EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK | 300 |
GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED | 350 |
ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV | 400 |
QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK | 450 |
KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV | 500 |
NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE | 550 |
IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR | 600 |
VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT | 650 |
PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL | 700 |
KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV | 750 |
SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH | 800 |
QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI | 850 |
STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG | 900 |
NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK | 950 |
RWR | 1000 |