fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G04404 C2H2 and C2HC zinc fingers superfamily protein (.1)

>AT4G04404.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 434
HindIII A|AGCTT 311
NcoI C|CATGG 131
PstI CTGCA|G 519
SpeI A|CTAGT 660
StyI C|C[AT][AT]GG 131


Click here to view TAIR data

>AT4G04404.1 length:693
ATGTCAATAA AAGAACCATA TTTTATGACT GAGATTGAGG ATCATGAGAT 
50
GAATGAAGCT GCGATGAGTT TGGTTATGTT TTCTAAACAA GTTTATGACT 
100
TTGATTTGAC TCATGGTAAT GATGATGATT CCATGGATTT AGATCAGCTT 
150
AAAGATTGTG TTGAGTCGAT GCTAGACTTC AGGGAAATGG TTTCTAACTC 
200
GGGTATGGAA AAGTCTACTA CTTGCAGTGA TGTTGTTGCT CTGAGAAGTA 
250
AATTGCAGAG TAAGTCAAGT CATAGATGTC AAATATGTGG CAAGAGTTTT 
300
GAGTGTTATC AAGCTTTAGG TGGTCACCGA AGACTTCATA GACCGATTAA 
350
AGGGAAATTA GCGCGTAAAA GGGAGTATTA TAAAGATGAT AATTCACTGT 
400
TTGATTCATC AGGACCATCA AGAGTGGAGG AGAAGATCTT AGATTGTGTT 
450
GAGTTGAAAC AAGACTTCGG CGAACTGCTT CCTTTGAATA GTAAGTTTCA 
500
GAAAAGACCT GTGAGTAGCT GCAGTTATAG ATGCAAAATA TGCGGCAAGA 
550
GTTTTGGGTG CTTTCAAGCT CTAGGTGCTC TAGGTGGCCA CCAAAGACTT 
600
CACAGACCGA TTAAAGGGAA ACTAGCGCGT AAAAGGAAGT ACAGTGAAGA 
650
TGATAATACA CTAGTTGACT CATCAGAAAC TAGACATGGG TGA
700

>AT4G04404.1 longest ORF length:230
MSIKEPYFMT EIEDHEMNEA AMSLVMFSKQ VYDFDLTHGN DDDSMDLDQL 
50
KDCVESMLDF REMVSNSGME KSTTCSDVVA LRSKLQSKSS HRCQICGKSF 
100
ECYQALGGHR RLHRPIKGKL ARKREYYKDD NSLFDSSGPS RVEEKILDCV 
150
ELKQDFGELL PLNSKFQKRP VSSCSYRCKI CGKSFGCFQA LGALGGHQRL 
200
HRPIKGKLAR KRKYSEDDNT LVDSSETRHG 
250