fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G04580 Homeodomain-like superfamily protein (.1)

>AT4G04580.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 19
EcoRV GAT|ATC 70
XbaI T|CTAGA 381


Click here to view TAIR data

>AT4G04580.1 length:501
ATGCAAGATC CGATGGTTAG ATCTTACATT AGGTCAGACA ATCCGCGAAT 
50
GCACTGGACC GACGATCTTG ATATCCGTTT TATTCAAGTT ATTGAAAAAC 
100
TCGGTGGCGA AGAGAGTGCA ACTCCTAAGA GAATTTTGAG TCTTATGGGT 
150
GTGAGAGACC TCACAATATC ACATGTCAAA AGTCATCTCC AGATGTATAG 
200
GAACAAAAAG AAAGAAGAAT CTAGTAAAGA AATAAAAATG ATGCGGGAGA 
250
TGACACAGAG GCAATCTCAG CAATATCTTC AAATCTATGA ACGTGCTACC 
300
CAATTTATCC AAAATCAACA AAGGCTACAA CTGGATAATA CTGAGAAGAT 
350
AACCCCAGTT TTGGGATCAA GTAACAAGTC TCTAGATCAA TCTTCAAAGG 
400
TTGGACTAAA TGAAAACAGA GGCAATGATG TTGTTGTTGT TGGTGGTGCA 
450
ACTGGTGAAG AAGAATTGTC CCTTGAACTC ACTCTTGGTC GCAAGTACTA 
500
A
550

>AT4G04580.1 longest ORF length:166
MQDPMVRSYI RSDNPRMHWT DDLDIRFIQV IEKLGGEESA TPKRILSLMG 
50
VRDLTISHVK SHLQMYRNKK KEESSKEIKM MREMTQRQSQ QYLQIYERAT 
100
QFIQNQQRLQ LDNTEKITPV LGSSNKSLDQ SSKVGLNENR GNDVVVVGGA 
150
TGEEELSLEL TLGRKY
200