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| Locus | Common name | Short description |
| AT4G04890 | PDF2 | protodermal factor 2 (.1) |
>AT4G04890.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, AccIII(BspMII), AfeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspMI, BssHII, BstAPI, BstBI, BstEII, BstXI, BstZ17I, Bsu36I, BtrI, ClaI, DraI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, MboII, MfeI, MlyI, MnlI, NaeI, , NarI, NgoMIV, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PspOMI, PvuI, RsrII, SacII, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, SwaI, XbaI, XcmI, XmaI
| Name | Recognition sequence | Cut positions |
| Acc65I | G|GTACC | 118 |
| AccI | GT|[AC][TG]AC | 1545, 1572 |
| AccII(FnuDII) | CG|CG | 533, 619, 1125, 1540, 1906 |
| AciI | C|CGC | 532, 1606 |
| AclI | AA|CGTT | 870, 1382 |
| AflII | C|TTAAG | 1227 |
| AflIII | A|CPuPyGT | 14, 1126, 1337, 1692, 1853 |
| AgeI | A|CCGGT | 82 |
| AluI | AG|CT | 153, 225, 402, 433, 472, 756, 769, 1090, 1366, 1424, 1497, 1501, 1657, 1871, 2125, 2194 |
| ApoI | Pu|AATTPy | 218, 1719 |
| AvaI | C|PyCGPuG | 1839 |
| AvaII | G|G[AT]CC | 468, 888 |
| BalI | TGG|CCA | 1433 |
| BamHI | G|GATCC | 1582, 1673 |
| BanI | G|GPyPuCC | 118 |
| BanII | GPuGCPy|C | 226 |
| BclI | T|GATCA | 2168 |
| BfaI | C|TAG | 165, 608, 758, 1115, 1233, 1422, 1499 |
| BsaAI | PyAC|GTPu | 1963 |
| BsaBI | GATNN|NNATC | 909, 983, 2027 |
| BsaHI | GPu|CGPyC | 918 |
| BsaJI | C|CNNGG | 1430 |
| BsaWI | [AT]|CCGG[AT] | 82, 1360, 1998 |
| BsiHKAI | G[AT]GC[AT]|C | 226 |
| BslI | CCNNNNN|NNGG | 462 |
| BsoBI | C|PyCGPuG | 1839 |
| Bsp1286I | G[GAT]GC[CAT]|C | 226 |
| BspHI | T|CATGA | 1601, 1791 |
| BspT107I(HgiCI) | G|G[TC][AG]CC | 118 |
| BsrBI | GAG|CGG | 1414 |
| BsrDI | GCAATGNN| | 445 |
| BsrFI | Pu|CCGGPy | 82 |
| BsrGI | T|GTACA | 1876 |
| BsrI | ACTGGN| | 802, 1048 |
| BssKI | |CCNGG | 1446, 1626, 1638, 1797 |
| BssSI | C|TCGTG | 784 |
| BstF5I | GGATGNN| | 979, 1621, 2002 |
| BstNI | CC|[AT]GG | 1446, 1626, 1797 |
| BstUI | CG|CG | 533, 619, 1125, 1540, 1906 |
| BstYI | Pu|GATCPy | 162, 551, 807, 1582, 1673, 1953 |
| BtgI | C|CPuPyGG | 1430 |
| BtsI | GCAGTGNN| | 1531 |
| Cac8I | GCN|NGC | 759, 1412, 1419, 1435, 1500 |
| Cfr10I | [AG]|CCGG[TC] | 82 |
| DdeI | C|TNAG | 133, 405, 438, 510, 730, 1093, 1206, 1285, 1504, 1650, 1941 |
| DpnI | GA-CH3|TC | 161, 290, 514, 550, 591, 613, 638, 806, 909, 1323, 1451, 1581, 1622, 1672, 1890, 1952, 2167 |
| DpnII | |GATC | 161, 290, 514, 550, 591, 613, 638, 806, 909, 1323, 1451, 1581, 1622, 1672, 1890, 1952, 2167 |
| DraIII | CACNNN|GTG | 359 |
| DrdI | GACNNNN|NNGTC | 1569 |
| EaeI | Py|GGCCPu | 1433 |
| Fnu4HI | GC|NGC | 474, 564, 768, 1415, 1656, 2196 |
| HaeIII | GG|CC | 1242, 1432 |
| HhaI | GCG|C | 620, 1539, 1907 |
| HinP1I | G|CGC | 620, 1539, 1907 |
| HincII | GTPy|PuAC | 1545, 1572, 2110 |
| HinfI | G|ANTC | 76, 137, 231, 380, 722, 842, 947, 968, 983, 1259, 1469, 1822, 1859, 2027, 2102, 2112 |
| HpaII | C|CGG | 81, 1359, 1637, 1997 |
| Hpy188I | TCN|GA | 60, 390, 406, 729, 865, 875, 912, 1256, 1584, 1819, 2099, 2165 |
| Hpy99I | CG[AT]CG| | 1543 |
| HpyCH4III | ACN|GT | 460, 1069, 1162, 1346, 1804, 2088, 2154, 2178 |
| HpyCH4IV | A|CGT | 172, 573, 869, 1381, 1690, 1962 |
| HpyCH4V | TG|CA | 766, 931, 1151, 1526, 1549, 1654, 1882 |
| KpnI | GGTAC|C | 118 |
| MboI | |GATC | 161, 290, 514, 550, 591, 613, 638, 806, 909, 1323, 1451, 1581, 1622, 1672, 1890, 1952, 2167 |
| MluI | A|CGCGT | 1126 |
| MscI | TGG|CCA | 1433 |
| MseI | T|TAA | 240, 315, 905, 1226, 2084, 2157, 2190 |
| MslI | CAPyNN|NNPuTG | 260, 346, 979 |
| MspA1I | C[AC]G|C[GT]G | 473, 1091 |
| MspI | C|CGG | 81, 1359, 1637, 1997 |
| MwoI | GCNNNNN|NNGC | 564, 609, 768, 1374, 1548, 1779 |
| N.BstNBI | GAGTCNNNN|N | 1474, 1827 |
| NciI | CC|[CG]GG | 1638 |
| NcoI | C|CATGG | 1430 |
| NdeI | CA|TATG | 31, 1306 |
| NheI | G|CTAGC | 759, 1423, 1500 |
| NlaIII | CATG| | 13, 368, 450, 973, 1293, 1336, 1429, 1600, 1790, 1852 |
| NlaIV | GGN|NCC | 118, 326, 530, 662, 1582, 1673 |
| NsiI | ATGCA|T | 1883 |
| NspI | PuCATG|Py | 14, 451, 1337, 1853 |
| PaeR7I | C|TCGAG | 1839 |
| PciI | A|CATGT | 14, 1337, 1853 |
| PflFI | GACN|NNGTC | 111 |
| PsiI | TTA|TAA | 941 |
| PspGI | |CC[AT]GG | 1446, 1626, 1797 |
| PstI | CTGCA|G | 932, 1527 |
| PvuII | CAG|CTG | 473, 1091 |
| RsaI | GT|AC | 1, 54, 117, 1215, 1875, 2175 |
| SacI | GAGCT|C | 226 |
| SalI | G|TCGAC | 1545, 1572 |
| Sau3AI | |GATC | 161, 290, 514, 550, 591, 613, 638, 806, 909, 1323, 1451, 1581, 1622, 1672, 1890, 1952, 2167 |
| Sau96I | G|GNCC | 468, 888 |
| ScaI | AGT|ACT | 1216 |
| ScrFI | CC|NGG | 1446, 1626, 1638, 1797 |
| SfcI | C|TPuPyAG | 932, 1527, 2123 |
| SmlI | C|TPyPuAG | 1227, 1839 |
| StuI | AGG|CCT | 1243 |
| StyI | C|C[AT][AT]GG | 1430 |
| Taqƒ¿I | T|CGA | 36, 228, 516, 719, 837, 1398, 1544, 1571, 1838 |
| TfiI | G|A[AT]TC | 76, 137, 231, 380, 722, 842, 947, 968, 983, 1259, 1859, 2027, 2102 |
| TliI | C|TCGAG | 1839 |
| TseI | G|C[AT]GC | 474, 564, 768, 1656, 2196 |
| Tsp45I | |GT[CG]AC | 126, 1165, 1711 |
| Tsp509I | |AATT | 217, 296, 830, 883, 1266, 1718 |
| TspRI | NNCA[CG]TGNN| | 1165, 1531, 1914 |
| Tth111I | GACN|NNGTC | 111 |
| XhoI | C|TCGAG | 1839 |
| XmnI | GAANN|NNTTC | 155, 1245 |
Click here to view TAIR data
>AT4G04890.1 length:2232
ATGTACCATC CAAACATGTT TGAGAGCCAT CATATGTTCG ATATGACCCC | 50 |
AAAGAGTACC TCTGATAACG ACTTGGGAAT CACCGGTAGC CGAGAAGATG | 100 |
ACTTTGAGAC CAAGTCAGGT ACCGAAGTCA CTACTGAGAA TCCTTCTGGT | 150 |
GAAGAGCTTC AAGATCCTAG CCAACGTCCC AACAAAAAGA AGCGTTACCA | 200 |
TCGCCACACG CAACGCCAAA TTCAAGAGCT CGAATCATTC TTTAAGGAAT | 250 |
GTCCTCATCC AGATGATAAG CAACGAAAAG AGTTGAGCCG TGATCTCAAT | 300 |
TTAGAGCCTC TTCAAGTTAA GTTTTGGTTC CAAAACAAAC GCACACAGAT | 350 |
GAAGGCACAA AGTGAGAGGC ATGAGAACCA GATTCTAAAG TCAGACAATG | 400 |
ACAAGCTCAG AGCAGAGAAC AATAGATACA AAGAAGCTCT AAGCAATGCT | 450 |
ACATGCCCTA ACTGTGGCGG TCCAGCTGCT ATTGGAGAAA TGTCTTTTGA | 500 |
CGAACAACAT CTCAGGATCG AAAATGCTCG GCTCCGCGAA GAGATTGATA | 550 |
GGATCTCTGC TATTGCTGCG AAATACGTTG GGAAGCCGTT AGGATCGTCT | 600 |
TTCGCTCCAC TAGCGATCCA CGCGCCTTCT CGTTCGCTTG ATCTTGAAGT | 650 |
TGGAAACTTT GGGAACCAGA CAGGCTTTGT AGGAGAAATG TATGGAACAG | 700 |
GGGACATTTT GAGGTCAGTT TCGATTCCTT CTGAGACTGA TAAGCCTATA | 750 |
ATCGTGGAGC TAGCGGTTGC AGCTATGGAG GAACTCGTGA GAATGGCTCA | 800 |
AACTGGAGAT CCTTTATGGC TTTCAACCGA TAATTCAGTC GAGATTCTCA | 850 |
ACGAAGAAGA GTATTTCAGA ACGTTTCCGA GAGGAATTGG ACCAAAGCCA | 900 |
TTAGGATTAA GATCAGAGGC GTCAAGACAA TCTGCAGTTG TTATAATGAA | 950 |
TCACATCAAT CTCGTTGAGA TTCTCATGGA TGTGAATCAA TGGTCTTGTG | 1000 |
TTTTCTCTGG GATTGTGTCA AGAGCCTTGA CACTTGAAGT TCTTTCAACT | 1050 |
GGAGTTGCTG GGAACTACAA CGGTGCTTTA CAAGTGATGA CAGCTGAGTT | 1100 |
TCAAGTTCCA TCACCCCTAG TCCCAACGCG TGAGAACTAC TTTGTGAGAT | 1150 |
ACTGCAAACA ACACAGTGAC GGCTCTTGGG CTGTGGTTGA TGTCTCTTTG | 1200 |
GACAGCCTTA GACCAAGTAC TCCAATCTTA AGAACTAGAA GAAGGCCTTC | 1250 |
AGGTTGTCTG ATTCAAGAAT TGCCTAATGG TTATTCTAAG GTTACATGGA | 1300 |
TAGAGCATAT GGAGGTAGAT GATAGATCAG TTCACAACAT GTATAAACCG | 1350 |
TTGGTTCAGT CCGGTTTAGC TTTCGGTGCG AAACGTTGGG TGGCTACACT | 1400 |
CGAACGACAA TGCGAGCGGC TTGCTAGCTC CATGGCCAGC AACATTCCTG | 1450 |
GTGATCTTTC CGTGATAACG AGTCCTGAAG GAAGGAAGAG TATGTTGAAG | 1500 |
CTAGCTGAGA GAATGGTTAT GAGTTTCTGC AGTGGTGTTG GCGCGTCGAC | 1550 |
TGCACACGCT TGGACAACAA TGTCGACAAC AGGATCCGAT GATGTTCGGG | 1600 |
TCATGACCCG CAAGAGTATG GATGATCCAG GAAGACCTCC GGGTATTGTT | 1650 |
CTTAGTGCAG CTACTTCATT CTGGATCCCA GTTGCTCCCA AACGTGTTTT | 1700 |
TGATTTCCTC CGTGACGAAA ATTCAAGAAA AGAGTGGGAT ATTCTGTCAA | 1750 |
ATGGAGGTAT GGTTCAGGAA ATGGCTCATA TAGCCAATGG TCATGAACCT | 1800 |
GGAAACTGTG TCTCCTTGCT CCGAGTCAAT AGTGGAAACT CGAGCCAGAG | 1850 |
CAACATGTTG ATTCTACAAG AGAGCTGTAC AGATGCATCA GGATCGTATG | 1900 |
TGATTTACGC GCCAGTGGAT ATAGTGGCGA TGAATGTGGT TCTAAGCGGT | 1950 |
GGAGATCCTG ATTACGTGGC GTTGTTGCCG TCTGGTTTTG CTATTTTACC | 2000 |
GGATGGTTCG GTTGGAGGAG GAGATGGGAA TCAGCATCAG GAAATGGTTT | 2050 |
CTACTACTTC TTCTGGGAGT TGTGGTGGTT CGCTTTTAAC CGTTGCGTTT | 2100 |
CAGATTCTTG TTGACTCTGT TCCTACAGCT AAACTCTCAC TTGGCTCGGT | 2150 |
GGCTACGGTT AATAGTCTGA TCAAATGTAC GGTGGAGAGG ATTAAAGCTG | 2200 |
CTGTTTCTTG TGATGTTGGA GGAGGAGCGT AG | 2250 |
>AT4G04890.1 longest ORF length:743
MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG | 50 |
EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN | 100 |
LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA | 150 |
TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS | 200 |
FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI | 250 |
IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP | 300 |
LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST | 350 |
GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL | 400 |
DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP | 450 |
LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK | 500 |
LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV | 550 |
LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP | 600 |
GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG | 650 |
GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF | 700 |
QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA | 750 |