Locus |
Common name |
Short description |
AT4G05170 |
bHLH114 |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) |
>AT4G05170.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, SalI, SmaI, SpeI, XbaI
Name |
Recognition sequence |
Cut positions |
BamHI
| G|GATCC |
63 |
BglII
| A|GATCT |
594 |
HindIII
| A|AGCTT |
330 |
NcoI
| C|CATGG |
67 |
PstI
| CTGCA|G |
650, 668 |
PvuII
| CAG|CTG |
653 |
SacI
| GAGCT|C |
103 |
StyI
| C|C[AT][AT]GG |
67 |
XhoI
| C|TCGAG |
307 |
Click here to view TAIR data
>AT4G05170.1 length:717
ATGAACATGC ATAATAGTTT CTTCGAAGGA CTATTAATCG ATCCTAACGA | 50 |
TCAATTACTA CCGGATCCAT GGTCCAAAAG TACAATTCCT AACGCTAAAT | 100 |
CTGAGCTCCT TGAAAACTTC CCATTCTTAG ATAACATGTT CTTGGTCGAT | 150 |
TCAGAAGCTG AATCTTTGTT GGATCATGAA ATCAGAAACC ATAAGTCGTC | 200 |
TAAGGAGCAA ATTACACAAG ACTACAAGAA TCTTACTTCA AAGAGGAGTG | 250 |
AAGAATTAGA AGAGAACAGC GATGAGTATT CACCGCGATT ACTAAAAAGA | 300 |
CCGAGACTCG AGACACTATC TCCATTGCCA AGCTTCAAAG TTCGTAAAGA | 350 |
AAAACTCGGA GATAGAATCA CTGCGCTTCA GCAACTGGTT TCTCCATTTG | 400 |
GCAAGACAGA TACAGCTTCT GTTCTCAACG AAGCTGTAGA GTACATAAAG | 450 |
TTTCTTCAAG AACAAGTCAC TGTATTGAGT AATCCAGAAC AGAACACCAT | 500 |
AGGATCTGTT CAACAACAGC AGTGTTCAAA CAAGAAATCT ATCAATACTC | 550 |
AAGGAGAAGT AGAAGAAGAC GAATGTAGTC CAAGAAGATA TGTAGATCTT | 600 |
TCGAGCCGTG GACTATGTCT AATGCCGATC TCAGCTTCAT ATCCCGTGGC | 650 |
TGCAGCTGCG GCTTCGGCTG CAGAGATGAA CGTACATCTG GTTTCTGGCA | 700 |
TCTTCCATTC TTTGTAA | 750 |
>AT4G05170.1 longest ORF length:238
MNMHNSFFEG LLIDPNDQLL PDPWSKSTIP NAKSELLENF PFLDNMFLVD | 50 |
SEAESLLDHE IRNHKSSKEQ ITQDYKNLTS KRSEELEENS DEYSPRLLKR | 100 |
PRLETLSPLP SFKVRKEKLG DRITALQQLV SPFGKTDTAS VLNEAVEYIK | 150 |
FLQEQVTVLS NPEQNTIGSV QQQQCSNKKS INTQGEVEED ECSPRRYVDL | 200 |
SSRGLCLMPI SASYPVAAAA ASAAEMNVHL VSGIFHSL | 250 |
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