fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G05170 bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

>AT4G05170.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BamHI G|GATCC 63
BglII A|GATCT 594
HindIII A|AGCTT 330
NcoI C|CATGG 67
PstI CTGCA|G 650, 668
PvuII CAG|CTG 653
SacI GAGCT|C 103
StyI C|C[AT][AT]GG 67
XhoI C|TCGAG 307


Click here to view TAIR data

>AT4G05170.1 length:717
ATGAACATGC ATAATAGTTT CTTCGAAGGA CTATTAATCG ATCCTAACGA 
50
TCAATTACTA CCGGATCCAT GGTCCAAAAG TACAATTCCT AACGCTAAAT 
100
CTGAGCTCCT TGAAAACTTC CCATTCTTAG ATAACATGTT CTTGGTCGAT 
150
TCAGAAGCTG AATCTTTGTT GGATCATGAA ATCAGAAACC ATAAGTCGTC 
200
TAAGGAGCAA ATTACACAAG ACTACAAGAA TCTTACTTCA AAGAGGAGTG 
250
AAGAATTAGA AGAGAACAGC GATGAGTATT CACCGCGATT ACTAAAAAGA 
300
CCGAGACTCG AGACACTATC TCCATTGCCA AGCTTCAAAG TTCGTAAAGA 
350
AAAACTCGGA GATAGAATCA CTGCGCTTCA GCAACTGGTT TCTCCATTTG 
400
GCAAGACAGA TACAGCTTCT GTTCTCAACG AAGCTGTAGA GTACATAAAG 
450
TTTCTTCAAG AACAAGTCAC TGTATTGAGT AATCCAGAAC AGAACACCAT 
500
AGGATCTGTT CAACAACAGC AGTGTTCAAA CAAGAAATCT ATCAATACTC 
550
AAGGAGAAGT AGAAGAAGAC GAATGTAGTC CAAGAAGATA TGTAGATCTT 
600
TCGAGCCGTG GACTATGTCT AATGCCGATC TCAGCTTCAT ATCCCGTGGC 
650
TGCAGCTGCG GCTTCGGCTG CAGAGATGAA CGTACATCTG GTTTCTGGCA 
700
TCTTCCATTC TTTGTAA
750

>AT4G05170.1 longest ORF length:238
MNMHNSFFEG LLIDPNDQLL PDPWSKSTIP NAKSELLENF PFLDNMFLVD 
50
SEAESLLDHE IRNHKSSKEQ ITQDYKNLTS KRSEELEENS DEYSPRLLKR 
100
PRLETLSPLP SFKVRKEKLG DRITALQQLV SPFGKTDTAS VLNEAVEYIK 
150
FLQEQVTVLS NPEQNTIGSV QQQQCSNKKS INTQGEVEED ECSPRRYVDL 
200
SSRGLCLMPI SASYPVAAAA ASAAEMNVHL VSGIFHSL
250