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| Locus | Common name | Short description |
| AT4G09820 | BHLH42, TT8, bHLH042 | TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) |
>AT4G09820.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AfeI, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BlpI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspMI, BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstEII, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HindIII, HpaI, HphI, I-CeuI, I-SceI, KpnI, MboII, MfeI, MlyI, MnlI, MscI, , NciI, NcoI, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SgrAI, SmaI, SpeI, SspI, StuI, SwaI, TliI, XcmI, XhoI, XmaI
| Name | Recognition sequence | Cut positions |
| AccII(FnuDII) | CG|CG | 1071, 1278 |
| AciI | C|CGC | 306, 1070 |
| AclI | AA|CGTT | 1140 |
| AflII | C|TTAAG | 70 |
| AflIII | A|CPuPyGT | 1279 |
| AluI | AG|CT | 40, 54, 243, 252, 469, 582, 1119, 1239, 1404 |
| ApoI | Pu|AATTPy | 494, 1132 |
| AvaII | G|G[AT]CC | 1232 |
| BanI | G|GPyPuCC | 990 |
| BanII | GPuGCPy|C | 583 |
| BfaI | C|TAG | 465, 539 |
| BglII | A|GATCT | 1080 |
| BsaAI | PyAC|GTPu | 421, 945, 1090, 1210 |
| BsaBI | GATNN|NNATC | 1547 |
| BsaHI | GPu|CGPyC | 990 |
| BsaJI | C|CNNGG | 1072, 1191, 1436 |
| BsaWI | [AT]|CCGG[AT] | 318 |
| BsiHKAI | G[AT]GC[AT]|C | 583, 1009 |
| BsiWI | C|GTACG | 1208 |
| BslI | CCNNNNN|NNGG | 384, 629, 949 |
| Bsp1286I | G[GAT]GC[CAT]|C | 583, 1009 |
| BspHI | T|CATGA | 1257, 1401 |
| BspT107I(HgiCI) | G|G[TC][AG]CC | 990 |
| BsrFI | Pu|CCGGPy | 630 |
| BsrI | ACTGGN| | 95 |
| BssKI | |CCNGG | 393 |
| BstBI | TT|CGAA | 1223 |
| BstF5I | GGATGNN| | 4, 390 |
| BstNI | CC|[AT]GG | 393 |
| BstUI | CG|CG | 1071, 1278 |
| BstYI | Pu|GATCPy | 1080 |
| BtgI | C|CPuPyGG | 1072 |
| Cac8I | GCN|NGC | 301, 630, 1495 |
| Cfr10I | [AG]|CCGG[TC] | 630 |
| DdeI | C|TNAG | 43, 246, 429, 481, 853, 1083, 1504 |
| DpnI | GA-CH3|TC | 773, 1021, 1079, 1146 |
| DpnII | |GATC | 773, 1021, 1079, 1146 |
| EaeI | Py|GGCCPu | 35 |
| Fnu4HI | GC|NGC | 65, 222 |
| HaeII | PuGCGC|Py | 990 |
| HaeIII | GG|CC | 34 |
| HhaI | GCG|C | 989 |
| HinP1I | G|CGC | 989 |
| HincII | GTPy|PuAC | 282, 448 |
| HinfI | G|ANTC | 6, 279, 786, 824, 903 |
| HpaII | C|CGG | 20, 36, 273, 317, 629 |
| Hpy188I | TCN|GA | 288, 497, 639, 711, 771, 854, 900, 1027, 1082, 1302 |
| Hpy99I | CG[AT]CG| | 994, 1104 |
| HpyCH4III | ACN|GT | 166, 451, 501, 858 |
| HpyCH4IV | A|CGT | 284, 420, 797, 944, 1089, 1139, 1209 |
| HpyCH4V | TG|CA | 169, 302, 406, 436, 509, 611, 660 |
| KasI | G|GCGCC | 990 |
| MboI | |GATC | 773, 1021, 1079, 1146 |
| MluI | A|CGCGT | 1279 |
| MseI | T|TAA | 69 |
| MslI | CAPyNN|NNPuTG | 517, 811 |
| MspA1I | C[AC]G|C[GT]G | 200, 1072 |
| MspI | C|CGG | 20, 36, 273, 317, 629 |
| MwoI | GCNNNNN|NNGC | 62, 219, 251, 306, 425, 477, 1500 |
| N.BstNBI | GAGTCNNNN|N | 284 |
| NaeI | GCC|GGC | 630 |
| NarI | GG|CGCC | 990 |
| NdeI | CA|TATG | 811 |
| NgoMIV | G|CCGGC | 630 |
| NlaIII | CATG| | 300, 662, 817, 874, 1043, 1235, 1256, 1400, 1448, 1538 |
| NlaIV | GGN|NCC | 236, 990, 1155, 1232 |
| NspI | PuCATG|Py | 301 |
| PflFI | GACN|NNGTC | 708 |
| PmlI | CAC|GTG | 945 |
| PspGI | |CC[AT]GG | 393 |
| RsaI | GT|AC | 1207, 1281, 1360 |
| SacI | GAGCT|C | 583 |
| SacII | CCGC|GG | 1072 |
| Sau3AI | |GATC | 773, 1021, 1079, 1146 |
| Sau96I | G|GNCC | 1232 |
| ScrFI | CC|NGG | 393 |
| SfcI | C|TPuPyAG | 1552 |
| SfoI | GGC|GCC | 990 |
| SmlI | C|TPyPuAG | 70, 1243 |
| SnaBI | TAC|GTA | 1210 |
| SphI | GCATG|C | 301 |
| StyI | C|C[AT][AT]GG | 1191 |
| Taqƒ¿I | T|CGA | 1222, 1455 |
| TfiI | G|A[AT]TC | 6, 786, 824, 903 |
| TseI | G|C[AT]GC | 65 |
| Tsp45I | |GT[CG]AC | 207, 314, 878, 998, 1164 |
| Tsp509I | |AATT | 117, 493, 1131 |
| TspRI | NNCA[CG]TGNN| | 504, 611 |
| Tth111I | GACN|NNGTC | 708 |
| XbaI | T|CTAGA | 466 |
| XmnI | GAANN|NNTTC | 849 |
Click here to view TAIR data
>AT4G09820.1 length:1557
ATGGATGAAT CAAGTATTAT TCCGGCAGAG AAAGTGGCCG GAGCTGAGAA | 50 |
AAAAGAGCTT CAAGGGCTGC TTAAGACGGC GGTTCAATCT GTGGACTGGA | 100 |
CTTATAGTGT CTTCTGGCAA TTTTGTCCTC AACAACGGGT CTTGGTGTGG | 150 |
GGGAATGGAT ACTACAACGG TGCAATAAAG ACGAGGAAGA CAACTCAACC | 200 |
AGCGGAGGTG ACGGCAGAAG AGGCGGCGTT AGAGAGGAGC CAACAGCTCA | 250 |
GGGAGCTTTA TGAGACACTT TTAGCCGGAG AGTCAACGTC AGAAGCAAGA | 300 |
GCATGCACCG CATTGTCACC GGAGGATTTG ACGGAGACAG AATGGTTTTA | 350 |
TCTAATGTGC GTCTCTTTCT CTTTTCCTCC TCCATCTGGG ATGCCAGGAA | 400 |
AAGCGTATGC AAGGAGGAAG CACGTATGGC TAAGTGGTGC AAATGAAGTT | 450 |
GACAGTAAAA CTTTTTCTAG AGCTATTCTC GCTAAGAGTG CTAAAATTCA | 500 |
GACAGTGGTT TGCATTCCAA TGCTTGATGG TGTTGTGGAA CTAGGCACAA | 550 |
CGAAAAAGGT AAGAGAAGAT GTAGAGTTTG TTGAGCTCAC AAAGAGTTTC | 600 |
TTCTATGACC ACTGCAAGAC GAACCCAAAG CCGGCTCTTT CTGAACACTC | 650 |
CACCTACGAA GTGCATGAAG AAGCCGAAGA CGAAGAAGAA GTAGAAGAAG | 700 |
AGATGACAAT GTCAGAGGAA ATGAGGCTTG GCTCTCCTGA TGATGAAGAT | 750 |
GTTTCCAATC AAAATCTACA CTCTGATCTT CATATTGAAT CAACCCATAC | 800 |
GTTAGACACA CATATGGACA TGATGAATCT AATGGAGGAA GGTGGAAACT | 850 |
ATTCTCAGAC AGTAACAACA CTTCTCATGT CACACCCCAC AAGTCTTCTT | 900 |
TCAGATTCAG TTTCCACATC TTCTTACATC CAATCATCGT TTGCCACGTG | 950 |
GAGGGTTGAG AATGGCAAAG AGCATCAGCA AGTGAAAACG GCGCCGTCGT | 1000 |
CACAATGGGT GCTCAAACAA ATGATCTTCA GAGTTCCTTT CCTCCATGAC | 1050 |
AACACTAAAG ATAAGAGGCT ACCGCGGGAA GATCTGAGCC ACGTAGTAGC | 1100 |
AGAGCGACGC AGGAGGGAGA AGCTGAACGA GAAATTCATA ACGTTGAGAT | 1150 |
CAATGGTTCC ATTTGTGACC AAGATGGATA AAGTCTCAAT CCTTGGAGAC | 1200 |
ACCATTGCGT ACGTAAATCA TCTTCGAAAG AGGGTCCATG AGCTTGAGAA | 1250 |
TACTCATCAT GAGCAACAGC ATAAGCGGAC GCGTACTTGT AAGAGAAAAA | 1300 |
CATCGGAGGA GGTGGAGGTT TCCATCATAG AGAATGATGT TTTGTTAGAG | 1350 |
ATGAGATGTG AGTACCGAGA TGGTTTGTTG CTTGACATTC TTCAGGTTCT | 1400 |
TCATGAGCTT GGTATAGAGA CTACGGCAGT TCATACCTCG GTGAACGACC | 1450 |
ATGATTTCGA GGCGGAGATA AGGGCGAAAG TAAGAGGGAA GAAAGCAAGC | 1500 |
ATCGCTGAGG TCAAAAGAGC CATCCACCAA GTCATAATAC ATGATACTAA | 1550 |
TCTATAG | 1600 |
>AT4G09820.1 longest ORF length:518
MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW | 50 |
GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR | 100 |
ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV | 150 |
DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF | 200 |
FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED | 250 |
VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL | 300 |
SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD | 350 |
NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD | 400 |
TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE | 450 |
MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS | 500 |
IAEVKRAIHQ VIIHDTNL | 550 |