fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G12050 Predicted AT-hook DNA-binding family protein (.1)

>AT4G12050.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 3, 376
BglII A|GATCT 208
PstI CTGCA|G 659


Click here to view TAIR data

>AT4G12050.1 length:1020
ATGGATCCAG TTCAATCTCA TGGATCACAA AGCTCTCTTC CTCCTCCTTT 
50
CCATGCTAGA GATTTCCAAT TACATCTTCA ACAACAACAA CAACATCAAC 
100
AACAACATCA ACAACAACAA CAACAACAGT TCTTTCTCCA CCATCATCAG 
150
CAACCACAAA GAAACCTTGA TCAAGATCAC GAGCAGCAAG GAGGGTCAAT 
200
ATTGAATAGA TCTATCAAGA TGGATCGCGA AGAGACAAGC GATAACATGG 
250
ACAACATCGC TAATACCAAC AGCGGTAGCG AAGGTAAAGA GATGAGTTTA 
300
CACGGAGGAG AAGGAGGAAG CGGTGGTGGA GGAAGTGGAG AACAGATGAC 
350
AAGAAGGCCA AGAGGAAGAC CAGCAGGATC CAAGAACAAA CCTAAAGCTC 
400
CAATAATCAT AACAAGAGAC AGCGCAAACG CGCTTCGAAC TCACGTCATG 
450
GAGATAGGAG ACGGATGTGA CATAGTTGAC TGTATGGCTA CGTTCGCTAG 
500
ACGCCGCCAA AGAGGCGTTT GCGTTATGAG CGGTACAGGA AGCGTTACTA 
550
ACGTCACTAT ACGTCAGCCT GGATCGCCAC CTGGCTCGGT GGTTAGCCTT 
600
CACGGCCGGT TTGAAATCCT CTCTCTTTCG GGATCTTTCT TGCCTCCGCC 
650
TGCGCCGCCT GCAGCCACCG GACTAAGCGT TTACCTAGCC GGAGGACAAG 
700
GGCAGGTCGT TGGAGGTAGT GTGGTGGGAC CTTTGTTGTG TTCGGGTCCT 
750
GTGGTGGTTA TGGCGGCTTC TTTTAGCAAT GCGGCGTACG AAAGGCTGCC 
800
TTTGGAAGAA GATGAGATGC AGACGCCAGT TCAAGGAGGC GGTGGAGGAG 
850
GAGGAGGTGG TGGTGGAATG GGATCTCCCC CGATGATGGG ACAGCAACAA 
900
GCTATGGCAG CTATGGCGGC GGCTCAAGGA CTACCACCGA ATCTTCTTGG 
950
TTCGGTTCAG TTGCCACCGC CACAACAGAA TGATCAGCAG TATTGGTCTA 
1000
CGGGTCGGCC ACCGTATTGA 
1050

>AT4G12050.1 longest ORF length:339
MDPVQSHGSQ SSLPPPFHAR DFQLHLQQQQ QHQQQHQQQQ QQQFFLHHHQ 
50
QPQRNLDQDH EQQGGSILNR SIKMDREETS DNMDNIANTN SGSEGKEMSL 
100
HGGEGGSGGG GSGEQMTRRP RGRPAGSKNK PKAPIIITRD SANALRTHVM 
150
EIGDGCDIVD CMATFARRRQ RGVCVMSGTG SVTNVTIRQP GSPPGSVVSL 
200
HGRFEILSLS GSFLPPPAPP AATGLSVYLA GGQGQVVGGS VVGPLLCSGP 
250
VVVMAASFSN AAYERLPLEE DEMQTPVQGG GGGGGGGGGM GSPPMMGQQQ 
300
AMAAMAAAQG LPPNLLGSVQ LPPPQQNDQQ YWSTGRPPY
350